GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 16:53:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pelobates cultripes genome assembly, chromosome: 11.
OW240922.1:99219262-99219281
ATGTTGCTGGAGCTCAGTGCGCCAGCAATT99219262GCCAAACCAGTCACAACCTTAATCATTGAATCCTTGGTGACTGAATACAT
NF053C01LF1F1002 Developing leaf Medicago truncatula cDNA clone NF053C01LF 5', mRNA sequence.
BE317654.2:261-280
AAACTTCATGGGTTTTCACGAAAAACAGCT261GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACTGAGTTTTTGGGTTT
GM700015B10F4 Gm-r1070 Glycine max cDNA clone Gm-r1070-6031 3', mRNA sequence.
BE821835.1:157-176
TATGGGTTATTGTCATCATGAAAAACCACT157GCCAAACCAGTCACAACCTTCACGCCGGAAAGCGAACCCTTAGGTTTCAA
EST5312764 GESD Medicago truncatula cDNA clone pGESD9N19 5' end, mRNA sequence.
BI311014.1:222-241
AAACTTCATGGGTTTTCACGAAAAACAGCT222GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACTGAGTTTTTGGGTTT
NF018G09PH1F1072 Phoma-infected Medicago truncatula cDNA clone NF018G09PH 5', mRNA sequence.
BQ141361.1:266-285
AAACTTCATGGGTTTTCACGAAAAACAGCT266GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACTGAGTTTTTGGGTTT
EST611579 KVKC Medicago truncatula cDNA clone pKVKC-11B7, mRNA sequence.
BQ165710.1:220-239
AAACTTCATGGGTTTTCACGAAAAACAGCT220GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACTGAGTTTTTGGGTTT
GM880003B20E09 Gm-r1088 Glycine max cDNA clone Gm-r1088-1002 3', mRNA sequence.
BU545335.1:127-146
TATGGGTTATTGTCATTATGAAAAGCCACC127GCCAAACCAGTCACAACCTTCACGCCGGAAAGCGAACCCTTAGGTTTCAG
Glycine max cDNA clone: GMFL01-49-F06, 3'end.
BW682394.1:199-218
TATGGGTTATTGTCATTATGAAAAGCCACC199GCCAAACCAGTCACAACCTTCACGCCGGAAAGCGAACCCTTAGGTTTCAG
EST637311 MTUS Medicago truncatula cDNA clone MTUS-15E11, mRNA sequence.
CA919593.1:197-216
AAACTTCATGGGTTTTCACGAAAAACAGCT197GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACTGAGTTTTTGGGTTT
Trifolium repens mRNA, clone: WCC32h24_092, unspecified EST.
FY465392.1:253-272
AAATTTCATGGGTTTTCACGAAACACAGCT253GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACAGAGTTTTTGGGTTT
TSA: Pisum sativum Ps_contig_mira-ass_40184 mRNA sequence.
JI935667.1:183-202
AAATTTCATGGGTYTTCACGAAAGACAGCT183GCCAAACCAGTCACAACCTTAACCCCGGTCAGCGAGTTTTTGGGTTTCAA
TSA: Medicago sativa cultivar Chilean F0D_8138 mRNA sequence.
JL874565.1:308-327
AAACTTCATGGGTTTTCACGAAAAACAGCT308GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACAGAGTTTTGGGTTTC
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_2213 mRNA sequence.
JL883412.1:276-295
AAACTTCATGGGTTTTCACGAAAAACAGCT276GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACAGAGTTTTTGGGTTT
TSA: Medicago truncatula Contig13013.Metrroot mRNA sequence.
JR368425.1:61-80
AAACTTCATGGGTTTTCACGAAAAACAGCT61GCCAAACCAGTCACAACCTTAACCCCAGTCTGAACTGAGTTTTTGGGTTT
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:26253010-26253029
TTTTACGGGTTGTCATCCTCAAACACCACT26253010GCCAAACCAGTCACAACCTTAACACCAGTCATTGAACCCTTCGGCTTCAA
Glycine max cultivar Williams 82 chromosome 2.
CP126427.1:15158943-15158962
TATGGGTTATTGTCATTATGAAAAGCCACC15158943GCCAAACCAGTCACAACCTTCACGCCGGAAAGCGAACCCTTAGGTTTCAG
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:9422837-9422856
AAATTTCATGGGTTTTCACGAAATACAGCT9422837GCCAAACCAGTCACAACCTTAACTCCAGTCTGAACCGAGTTTTTGGGTTT
Trifolium fragiferum genome assembly, chromosome: 8.
OX940796.1:41436463-41436482
TTTTACGGGTTATCATCCTCAAACACCACA41436463GCCAAACCAGTCACAACCTTAACCCCTGTCATTGAACCCTTCGGCTTCAA
Medicago lupulina genome assembly, chromosome: 2.
OY283140.1:9402785-9402804
AAACTTCATGGGTTTTCACGAAAAACAGCT9402785GCCAAACCAGTCACAACCTTAACTCCAGTCTGAACTGAGTTTTTGGGTTT
Lathyrus aphaca genome assembly, chromosome: 7.
OZ014525.1:91208120-91208139
AAATTTCATGGGTTTTCACGAAAAACAGCT91208120GCCAAACCAGTCACAACCTTAACCCTGGTCAAGGAGTTTTTGGGTTTCAA
Sequence 63074 from patent US 7569389.
GP694754.1:1066-1085
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG1066AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
Sequence 26749 from patent US 9029636.
HK935812.1:1090-1109
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG1090AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
Sequence 55237 from patent US 9029636.
HK964300.1:1021-1040
TTGAAACCTAAGGGTTCGCTTTCCGGCGTG1021AAGGTTGTGACTGGTTTGGCAGTGGTTGGTGGTGGATTCGGTTGGTGGCG
NF078H02DT1F1027 Drought Medicago truncatula cDNA clone NF078H02DT 5', mRNA sequence.
BF635037.1:446-465
AAACCCAAAAACTCAGTTCAGACTGGGGTT446AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
EST486151 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-15O8 5' end, mRNA sequence.
BG584391.1:248-267
AAACCCAAAAACTCAGTTCAGACTGGGGTT248AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
EST529654 GPOD Medicago truncatula cDNA clone pGPOD-2F7 5' end, mRNA sequence.
BI308234.1:303-322
AAACCCAAAAACTCAGTTCAGACTGGGGTT303AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
TZS10 TZS (Sapwood-heartwood transition zone of black locust - Summer) Robinia pseudoacacia cDNA, mRNA sequence.
BI642434.1:245-264
CTGAAACCCAAGGGTTCACTTTCTGGGGTC245AAGGTTGTGACTGGTTTGGCGGGGGTGTTCGATGATGATAACCCATAAAT
sal83b10.y1 Gm-c1063 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1063-2396 5', mRNA sequence.
BM731716.1:124-143
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG124AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
NF019B07IR1F1059 Irradiated Medicago truncatula cDNA clone NF019B07IR 5', mRNA sequence.
BQ152477.1:286-305
AAACCCAAAAACTCAGTTCAGACTGGGGTT286AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
NF040E09IR1F1070 Irradiated Medicago truncatula cDNA clone NF040E09IR 5', mRNA sequence.
BQ153616.1:421-440
AAACCCAAAAACTCAGTTCAGACTGGGGTT421AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
sas65b10.y1 Gm-c1023 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1023-5467 5' similar to TR:Q9SIH9 Q9SIH9 AT2G38820 PROTEIN, mRNA sequence.
BU761241.1:416-435
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG416AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
s13dNF13B09VI077_399897 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence.
CX517439.1:331-350
AAACCCAAAAACTCAGTTCAGACTGGGGTT331AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
s13dNF1SG04VI034_469296 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence.
CX521746.1:331-350
AAACCCAAAAACTCAGTTCAGACTGGGGTT331AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
MHAM15B_H04_T3_032.seq MHAM2 Medicago truncatula/Glomus versiforme mixed EST library cDNA, mRNA sequence.
CX549507.1:286-305
AAACCCAAAAACTCAGTTCAGACTGGGGTT286AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
Glycine max cDNA, clone: GMFL02-36-L15, 3'end.
DB985437.1:144-163
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG144AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
454GmaGlobSeed177249 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK442617.1:79-98
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG79AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
454GmaGlobSeed531092 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD788443.1:168-187
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG168AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
TSA: Pisum sativum Ps_contig_mira-ass_56944 mRNA sequence.
JI949032.1:134-153
TTGAAACCCAAAAACTCGCTGACCGGGGTT134AAGGTTGTGACTGGTTTGGCAGCTGTCTTTCGTGAAAACCCATGAAATTT
Glycine max cDNA, clone: GMFL01-49-F06.
AK246034.1:1720-1739
CTGAAACCTAAGGGTTCGCTTTCCGGCGTG1720AAGGTTGTGACTGGTTTGGCGGTGGCTTTTCATAATGACAATAACCCATA
Medicago truncatula strain A17, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.
AC243345.3:202972-202991
AAACCCAAAAACTCAGTTCAGACTGGGGTT202972AAGGTTGTGACTGGTTTGGCAGCTGTTTTTCGTGAAAACCCATGAAGTTT
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:25162758-25162777
TTGAAGCCGAAGGGTTCAATGGCTGGTGTT25162758AAGGTTGTGACTGGTTTGGCAGTGGTGTTTGAGGAAGATAACCAGTTAAA
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:47215012-47215031
AAACCCAAAAACTCTGTTCAGACTGGGGTT47215012AAGGTTGTGACTGGTTTGGCAGCTGTGTTTCGTGAAAACCCATGAAATTT
Glycine max cultivar Williams 82 chromosome 10.
CP126435.1:2728559-2728578
TTGAAACCTAAGGGTTCGCTTTCCGGCGTG2728559AAGGTTGTGACTGGTTTGGCAGTGGTTTTTCATGATGACAATAACCCATA
Vicia faba genome assembly, chromosome: 5.
OX451740.1:843562819-843562838
TTGAAACCCAAAAGCTCGCTGACTGGAGTT843562819AAGGTTGTGACTGGTTTGGCAGCTGTCTTTCGTGAAAATCCATGAAATTT
Trifolium dubium genome assembly, chromosome: 4.
OX638065.1:45261947-45261966
AAACCCAAAAACTCAGTTCAGACTGGGGTT45261947AAGGTTGTGACTGGTTTGGCAGCTGTATTTCGTGAAAACCCATGAAATTT
Trifolium dubium genome assembly, chromosome: 11.
OX638072.1:32554722-32554741
AAACCCAAAAACTCGGTTCAGACTGGGGTT32554722AAGGTTGTGACTGGTTTGGCAGCTGTATTTCGTGAAAACCCATGAAATTT
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:48551325-48551344
AAACCCAAAAACTCTGTTCAGACTGGGGTT48551325AAGGTTGTGACTGGTTTGGCAGCTGTGTTTCGTGAAAACCCATGAAATTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCAAACCAGTCACAACCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCAAACCAGTCACAACCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.361 | 0.352 | search_plus_done; http://172.18.8.135:50400/match?q=GCCAAACCAGTCACAACCTT&k=0&no_gap=0&offset=0&limit=50
0.831 | 0.470 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGTTGTGACTGGTTTGGC&k=0&no_gap=0&offset=0&limit=30
0.849 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).