GGGenome | Results

データベース：

ミスマッチ/ギャップを許容ミスマッチのみ許容：塩基まで (検索する配列長の25%まで)
双方向を検索＋方向のみ検索－方向のみ検索

2025-04-03 11:47:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GR__Ea38D04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea38D04 5', mRNA sequence.
CO076722.1:667-686

CTGAATGACGTGCTTAAATGCAGCCCCAAA667GCCAAGCCACACAGGTAAATGAAATCTTGTTTG

GR__Ea06H23.r GR__Ea Gossypium raimondii cDNA clone GR__Ea06H23 3', mRNA sequence.
CO087844.1:770-789

CTGAATGACGTGCTTAAATGCAGCCCCAAA770GCCAAGCCACACAGGTAAATGAAATCTTGTTTG

Theobroma cacao, mRNA sequence (KZ0AAV1YJ08).
CU540749.1:731-750

CTCGATAACATGCTTAAAAGCAGCTCCAAA731GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

UCRCS04_2_023C10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_023_T7_C10, mRNA sequence.
CV886455.1:738-757

CTGAATGACATGTTTAAATGCTGCCCCAAA738GCCAAGCCACACAGGTAAATGGAACCTCGTCTGAGTCCATGCGAAGATCC

UCRCS08_30F12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-30F12-K24-1-5.b, mRNA sequence.
CX073037.1:761-780

CTGAATGACATGTTTAAATGCTGCCCCAAA761GCCAAGCCACACAGGTAAATGGAATACTATAGAACGATATTCCTTTGTAG

UCRCS08_8D09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8D09-H18-1-6.g, mRNA sequence.
CX078328.1:722-741

CTGAATGACATGTTTAAATGCTGCCCCAAA722GCCAAGCCACACAGGTAAATGGAACCTCGTCTGAGTCCATGCAAAGATCC

KumquatSL_FIII1-B03.g Fortunella margarita adult leaf subtraction library Citrus japonica var. margarita cDNA, mRNA sequence.
GW690335.1:93-112

CTGAATGACATGTTTAAATGCTGCCCCAAA93GCCAAGCCACACAGGTAAATGGAACCTCGTCTGAGTCCATGCAAAGATCC

F07_51396.67.S1108173218.LDYN1-67.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ116762.1:633-652

CTGAATGACGTGCTTAAATGCAGCCCCAAA633GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

GH_TBb061P02f Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO188156.1:395-414

CTGAATGACGTGCTTAAATGCAGCCCCAAA395GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:74742448-74742467

CTGAATGACGTGCTTAAATGCAGCCCCAAA74742448GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:3453928-3453947

CAGAATGACATGCTTAAATGCAGCCCCAAA3453928GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

Swietenia macrophylla isolate HCNGB_00002344 chromosome 1.
CP135559.1:11856240-11856259

CTGTACAGCATGCTTGAATGCTGCCCCAAA11856240GCCAAGCCACACAGGTAAATGGAACCTCGTCTGAGTCCATGCAAAGATCC

Theobroma cacao isolate Sca6 chromosome 1.
CP139290.1:8691713-8691732

CTCGATAACATGCTTAAAAGCAGCTCCAAA8691713GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

Theobroma cacao genome assembly, chromosome: I.
LT594788.1:8810278-8810297

CTCGATAACATGCTTAAAAGCAGCTCCAAA8810278GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

Theobroma cacao genome assembly, chromosome: 1.
OY284438.1:8997173-8997192

CTCGATAACATGCTTAAAAGCAGCTCCAAA8997173GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

Theobroma cacao genome assembly, chromosome: 1.
OY284448.1:8891265-8891284

CTCGATAACATGCTTAAAAGCAGCTCCAAA8891265GCCAAGCCACACAGGTAAATGAAATCTTGTTTGAGTCCATGCAAAGATCC

Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:7386498-7386517

CTGAATGACATGTTTAAATGCTGCCCCAAA7386498GCCAAGCCACACAGGTAAATGGAACCTCGTCTGAGTCCATGCAAAGATCC

Dryas octopetala genome assembly, chromosome: 4.
OY992835.1:11113919-11113938

CTCAATAGCATGCTTAAATGCTGCCCCAAA11113919GCCAAGCCACACAGGTAAATGAAATCTTGTCTGGGTCCATGCAAAGATCC

Nibea albiflora genome assembly, chromosome: 11.
LR699034.1:24037974-24037993

CTGTATATTTACCTGTATAGTTACATGTGT24037974ATTTACCTGTGTGGCTTGGCTGTACTTGCTCCTGTCACAGTTCTGCAGCA

Sequence 1 from patent US 7060874.
AR892035.1:2630-2649

GGATCTTTGCATGGACTCAAACAAGATTTC2630ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Sequence 49388 from Patent WO2008034648.
FB830115.1:2342-2361

GGATCTTTGCATGGACTCAAACAAGATTTC2342ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Sequence 61715 from Patent WO2008034648.
FB842442.1:2342-2361

GGATCTTTGCATGGACTCAAACAAGATTTC2342ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Sequence 14699 from patent US 7557201.
GP483702.1:347-366

GGATCTTTGCATGGACTCAAACAAGATTTC347ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Sequence 49388 from Patent EP2090662.
HB700174.1:2342-2361

GGATCTTTGCATGGACTCAAACAAGATTTC2342ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Sequence 61715 from Patent EP2090662.
HB712501.1:2342-2361

GGATCTTTGCATGGACTCAAACAAGATTTC2342ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Sequence 174977 from Patent EP2090662.
HB825763.1:2342-2361

GGATCTTTGCATGGACTCAAACAAGATTTC2342ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

GA__Eb0031J08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0031J08f, mRNA sequence.
BF277775.1:54-73

GGATCTTTGCATGGACTCAAACAAGATTTC54ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

GA__Eb0031N16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0031N16f, mRNA sequence.
BF277854.1:54-73

GGATCTTTGCATGGACTCAAACAAGATTTC54ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

GA__Eb0032B14f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032B14f, mRNA sequence.
BF278209.1:54-73

GGATCTTTGCATGGACTCAAACAAGATTTC54ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

GR__Ea38D04.r GR__Ea Gossypium raimondii cDNA clone GR__Ea38D04 3', mRNA sequence.
CO076723.1:122-141

GGATCTTTGCATGGACTCAAACAAGATTTC122ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

GR__Ea16C13.r GR__Ea Gossypium raimondii cDNA clone GR__Ea16C13 3', mRNA sequence.
CO094188.1:331-350

GGATCTTTGCATGGACTCAAACAAGATTTC331ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

UCRCS08_0003I13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0003I13, mRNA sequence.
CV713928.1:272-291

GGATCTTTGCATGGACTCAGACGAGGTTCC272ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

UCRCS08_8D09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8D09-H18-1-5.b, mRNA sequence.
CX078327.1:530-549

GGATCTTTGCATGGACTCAGACGAGGTTCC530ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

Citrus unshiu mRNA, clone: FBI0124, 5'-end sequence, expressed in floral bud.
DC888039.1:394-413

GGATCTTTGCATGGACTCAGACGAGGTTCC394ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

CM050B01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR456945.1:375-394

GGATCTTTGCATGGACTCAAACAAGATAAC375ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

UFL_559_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES792037.1:244-263

GGATCTTTGCATGGACTCAAACAAGATTTC244ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

sg086D02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV496343.1:406-425

GGATCTTTGCATGGACTCAAACAAGATTTC406ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

sg092E01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV496572.1:317-336

GGATCTTTGCATGGACTCAAACAAGATTTC317ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

F03_F-29_028 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX172481.1:428-447

GGATCTTTGCATGGACTCAAACAAGATTTC428ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

CS00-C3-705-088-A07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY741695.1:270-289

GGATCTTCGCATGGACTCAGACGAGGTTCC270ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

CR05-C1-102-023-E10-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY768234.1:172-191

GGATCTTTGCATGGACTCAGACGAGGTTCC172ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

CR05-C1-102-034-D09-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY769024.1:172-191

GGATCTTTGCATGGACTCAGACGAGGTTCC172ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

KumquatSL_FIII1-B03.b Fortunella margarita adult leaf subtraction library Citrus japonica var. margarita cDNA, mRNA sequence.
GW690338.1:441-460

GGATCTTTGCATGGACTTAGACGAGGTTCC441ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

Gossypium hirsutum phosphoenolpyruvate carboxylase 1 (PEPC1) mRNA, complete cds.
AF008939.1:2630-2649

GGATCTTTGCATGGACTCAAACAAGATTTC2630ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Gossypioides kirkii chromosome KI_09.
CP032251.1:126230-126249

GGATCTTTGCATGGACTCAAACAAGATTTC126230ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCGTTTAAGCACGTCATTCAG

Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:465448-465467

GGATCTTTGCATGGACTCAAACAAGATTTC465448ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:40470760-40470779

GGATCTTTGCATGGACTCAAACAAGATTTC40470760ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:432859-432878

GGATCTTTGCATGGACTCAAACAAGATTTC432859ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCACGTCATTCAG

Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:1203239-1203258

GGATCTTTGCATGGACTCAAACGAGATTTC1203239ATTTACCTGTGTGGCTTGGCTTTGGGGCTGCATTTAAGCATGTCATTCAG

Theobroma grandiflorum isolate C1074 chromosome 1.
CP142130.1:37152080-37152099

GGATCTTTGCATGGACTCAAACAAGATTTC37152080ATTTACCTGTGTGGCTTGGCTTTGGAGCTGCTTTTAAGCATGTTATCGAG

Citrus sinensis phosphoenolpyruvate carboxylase mRNA, complete cds.
EF058158.2:2348-2367

GGATCTTCGCATGGACTCAGACGAGGTTCC2348ATTTACCTGTGTGGCTTGGCTTTGGGGCAGCATTTAAACATGTCATTCAG

Theobroma cacao genome assembly, chromosome: 1.
OY284458.1:30233920-30233939

GGATCTTTGCATGGACTCAAACAAGATTTC30233920ATTTACCTGTGTGGCTTGGCTTTGGAGCTGCTTTTAAGCATGTTATCGAG

Data Export:

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCAAGCCACACAGGTAAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCAAGCCACACAGGTAAAT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.510 | 0.502 | search_plus_done; http://172.18.8.135:50400/match?q=GCCAAGCCACACAGGTAAAT&k=0&no_gap=0&offset=0&limit=50
1.378 | 0.868 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTACCTGTGTGGCTTGGC&k=0&no_gap=0&offset=0&limit=32
1.400 | 0.022 | cgi_end;

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