GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-02 14:53:19, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Humulus lupulus var. lupulus mRNA, contig: comp277016_c0_seq1.
LA377657.1:845-864
TGAAAAGATAATAAAGGGATAGAGAATTTT845GCCACAAACTTGTTAATCCCAGAACATTGTTCTGGGGTGAAGAGCTTCCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp277016_c0_seq2.
LA377658.1:1137-1156
TGAAAAGATAATAAAGGGATAGAGAATTTT1137GCCACAAACTTGTTAATCCCAGAACATTGTTCTGGGGTGAAGAGCTTCCA
Humulus lupulus 10-12 DNA, chromosome 4, nearly complete sequence.
AP031505.1:200238836-200238855
TGAAAAGATAATAAAGGAATAGAGAATTTT200238836GCCACAAACTTGTTAATCCCATAACATTGTTATGGGGTGAAGAGCTTCCA
Humulus lupulus 10-12 DNA, chromosome 4, nearly complete sequence.
AP031516.1:201414585-201414604
TGAAAAGATAATAAAGGAATAGAGAATTTT201414585GCCACAAACTTGTTAATCCCATAACATTGTTATGGGGTGAAGAGCTTCCA
Humulus lupulus Saaz DNA, chromosome 4, nearly complete sequence.
AP031525.1:201024864-201024883
TGAAAAGATAATAAAGGAATAGAGAATTTT201024864GCCACAAACTTGTTAATCCCATAACATTGTTATGGGGTGAAGAGCTTCCA
Humulus lupulus Saaz DNA, chromosome 4, nearly complete sequence.
AP031535.1:199394325-199394344
TGAAAAGATAATAAAGGAATAGAGAATTTT199394325GCCACAAACTTGTTAATCCCATAACATTGTTATGGGGTGAAGAGCTTCCA
Humulus lupulus Saaz DNA, chromosome 4, nearly complete sequence.
AP031545.1:202570139-202570158
TGAAAAGATAATAAAGGAATAGAGAATTTT202570139GCCACAAACTTGTTAATCCCATAACATTGTTATGGGGTGAAGAGCTTCCA
Humulus lupulus 10-12 DNA, chromosome 4, nearly complete sequence.
AP031555.1:202041157-202041176
TGAAAAGATAATAAAGGAATAGAGAATTTT202041157GCCACAAACTTGTTAATCCCATAACATTGTTATGGGGTGAAGAGCTTCCA
Cannabis sativa cultivar ERBxHO40_23 chromosome 8.
CP158659.1:53717774-53717793
TGAAAAGATAATAAAGGGATAGAGAATTTT53717774GCCACAAACTTGTTAATCCCAGAACATTGTTCTGGTGTAAAAAGCTTCCA
Chionographis japonica genome assembly, chromosome: 8.
OX393556.1:75463448-75463467
TGGAAGGATAGCAGAGGGACTGAAAATTTT75463448GCCACAAACTTGTTAATCCCCGAGCACTGATCGGGAGAGAAGAGCTTCCA
Ceriagrion tenellum genome assembly, chromosome: 7.
OY720639.1:83316264-83316283
CCTACCCTTGATCCATAAATCCACCCAGGC83316264GCCACAAACTTGTTAATCCCGGGCACCGCGCAAACCAGAACGGGTAAAGC
Pyrrhosoma nymphula genome assembly, chromosome: 8.
OY754335.1:55944878-55944897
CCTACCCTTGATCCATAAATCCACCCTGCC55944878GCCACAAACTTGTTAATCCCCGGCACCGCGCACTGCAGCGGGAAAACCAG
TSA: Cannabis sativa PK17530.1_1.CasaPuKu mRNA sequence.
JP449789.1:394-413
TGGAAGCTTTTTACACCAGAACAATGTTCT394GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus 10-12 DNA, chromosome 7, nearly complete sequence.
AP031508.1:73736378-73736397
TGGAAGCTCTTCACCCCAGAACAATGTTCT73736378GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus 10-12 DNA, chromosome 7, nearly complete sequence.
AP031519.1:73950835-73950854
TGGAAGCTCTTCACCCCAGAACAATGTTCT73950835GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus Saaz DNA, chromosome 2, nearly complete sequence.
AP031523.1:208417328-208417347
TGGAAGCTCTTCACCCCAGAACAATGTTCT208417328GGGATTAACAAGTTTGTGGCAAAATTCTCTAAACCTTTATTATTTTTTCA
Humulus lupulus Saaz DNA, chromosome 7, nearly complete sequence.
AP031528.1:72559814-72559833
TGGAAGCTCTTCACCCCAGAACAATGTTCT72559814GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus Saaz DNA, chromosome 2, nearly complete sequence.
AP031533.1:207049687-207049706
TGGAAGCTCTTCACCCCAGAACAATGTTCT207049687GGGATTAACAAGTTTGTGGCAAAATTCTCTAAACCTTTATTATTTTTTCA
Humulus lupulus Saaz DNA, chromosome 7, nearly complete sequence.
AP031538.1:76411388-76411407
TGGAAGCTCTTCACCCCAGAACAATGTTCT76411388GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus Saaz DNA, chromosome 2, nearly complete sequence.
AP031543.1:206528879-206528898
TGGAAGCTCTTCACCCCAGAACAATGTTCT206528879GGGATTAACAAGTTTGTGGCAAAATTCTCTAAACCTTTATTATTTTTTCA
Humulus lupulus Saaz DNA, chromosome 7, nearly complete sequence.
AP031548.1:74907169-74907188
TGGAAGCTCTTCACCCCAGAACAATGTTCT74907169GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus 10-12 DNA, chromosome 7, nearly complete sequence.
AP031558.1:74404062-74404081
TGGAAGCTCTTCACCCCAGAACAATGTTCT74404062GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus japonicus seta1 DNA, chromosome 7, nearly complete sequence.
AP038378.1:67127751-67127770
TGGAAGCTCTTCACCCCAGAACAATGTTCT67127751GGGATTAACAAGTTTGTGGCGAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus genome assembly, chromosome: 2.
OY720648.1:73235527-73235546
TGGAAGCTCTTCACCCCAGAACAATGTTCT73235527GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus genome assembly, chromosome: 5.
OY720652.1:44336763-44336782
TGGAAGCTCTTCACCCCATAACAATGTTAT44336763GGGATTAACAAGTTTGTGGCAAAATTCTCTATTCCTTTATTATCTTTTCA
Tridacna gigas genome assembly, chromosome: 5.
OX244032.2:47536326-47536345
GTAGTTGCTAATAAAAGATTTCTAAGTAAT47536326GGGATTAACAAGTTTGTGGCAGAAAATTTCAAAAACAATAACAGTTAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCACAAACTTGTTAATCCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCACAAACTTGTTAATCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.183 | 0.174 | search_plus_done; http://172.18.8.135:50800/match?q=GCCACAAACTTGTTAATCCC&k=0&no_gap=0&offset=0&limit=50
0.268 | 0.085 | search_minus_done; http://172.18.8.135:50800/match?q=GGGATTAACAAGTTTGTGGC&k=0&no_gap=0&offset=0&limit=38
0.278 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).