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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:33:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Humulus lupulus var. lupulus mRNA, contig: comp277016_c0_seq1.
LA377657.1:845-864
TGAAAAGATAATAAAGGGATAGAGAATTTT845GCCACAAACTTGTTAATCCCAGAACATTGTTCTGGGGTGAAGAGCTTCCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp277016_c0_seq2.
LA377658.1:1137-1156
TGAAAAGATAATAAAGGGATAGAGAATTTT1137GCCACAAACTTGTTAATCCCAGAACATTGTTCTGGGGTGAAGAGCTTCCA
Chionographis japonica genome assembly, chromosome: 8.
OX393556.1:75463448-75463467
TGGAAGGATAGCAGAGGGACTGAAAATTTT75463448GCCACAAACTTGTTAATCCCCGAGCACTGATCGGGAGAGAAGAGCTTCCA
Ceriagrion tenellum genome assembly, chromosome: 7.
OY720639.1:83316264-83316283
CCTACCCTTGATCCATAAATCCACCCAGGC83316264GCCACAAACTTGTTAATCCCGGGCACCGCGCAAACCAGAACGGGTAAAGC
Pyrrhosoma nymphula genome assembly, chromosome: 8.
OY754335.1:55944878-55944897
CCTACCCTTGATCCATAAATCCACCCTGCC55944878GCCACAAACTTGTTAATCCCCGGCACCGCGCACTGCAGCGGGAAAACCAG
TSA: Cannabis sativa PK17530.1_1.CasaPuKu mRNA sequence.
JP449789.1:394-413
TGGAAGCTTTTTACACCAGAACAATGTTCT394GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus genome assembly, chromosome: 2.
OY720648.1:73235527-73235546
TGGAAGCTCTTCACCCCAGAACAATGTTCT73235527GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus genome assembly, chromosome: 5.
OY720652.1:44336763-44336782
TGGAAGCTCTTCACCCCATAACAATGTTAT44336763GGGATTAACAAGTTTGTGGCAAAATTCTCTATTCCTTTATTATCTTTTCA
Tridacna gigas genome assembly, chromosome: 5.
OX244032.2:47536326-47536345
GTAGTTGCTAATAAAAGATTTCTAAGTAAT47536326GGGATTAACAAGTTTGTGGCAGAAAATTTCAAAAACAATAACAGTTAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCACAAACTTGTTAATCCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCACAAACTTGTTAATCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.220 | 0.211 | search_plus_done; http://172.18.8.135:50400/match?q=GCCACAAACTTGTTAATCCC&k=0&no_gap=0&offset=0&limit=50
0.311 | 0.091 | search_minus_done; http://172.18.8.135:50400/match?q=GGGATTAACAAGTTTGTGGC&k=0&no_gap=0&offset=0&limit=45
0.314 | 0.003 | cgi_end;

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