GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-26 06:16:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MAG: Deltaproteobacteria bacterium isolate bin79 chromosome.
CP070660.1:1612168-1612187
AACGCTCCAGTTCCCACTCCACACGTTTCC1612168GCCACAAGCTCAAAGACCTCTTATTGCTTTTTGTCAAGGTTTATATCCCA
Vigna angularis mRNA, clone: VES04C03.
HX943640.1:227-246
ATCCCCCGCCCCTCCCTGAGGCCCGCGTCC227GCCACAAGCTCAAAGACCTCTTCGTCTCCTCACCTCCGCCACCCCTTAAC
Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
AP015038.1:20635702-20635721
GCCGCAAGACCCTCCCCGAGGCTCGCGTCC20635702GCCACAAGCTCAAAGACCTCTTCGTCTCCTCACCTCCACCACCCCTTAAC
Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
AP015039.1:19991485-19991504
ATCCCCCGCCCCTCCCCGAGGCCCGCGTCC19991485GCCACAAGCTCAAAGACCTCTTCGTCTCCTCACCTCCGCCACCCCTTAAC
Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
AP015044.1:26259771-26259790
ATCCCGCGCCCCTCCCCGAGGCCCGCGTCC26259771GCCACAAGCTCAAAGACCTCTTCGTCTCCTCACCTCCGCCACCCCTTAAC
Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
AP015044.1:34591792-34591811
ATCCCGCGCCCCTCCCCGAGGCCCGCGTCC34591792GCCACAAGCTCAAAGACCTCTTCGTCTCCTCACCTCCGCCACCCCTTAAC
Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
AP015035.1:39781780-39781799
GTTAAGGGGTGGCGGAGGTGAGGAGACGAA39781780GAGGTCTTTGAGCTTGTGGCGGACGCGGGCCTCGGGGAGGGGCGGGGGAT
Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
AP015037.1:788974-788993
GTTAAGGGGTGGCGGAGGTGAGGAGACGAA788974GAGGTCTTTGAGCTTGTGGCGGACGCGGGCCTCAGGGAGGGGCGGGGGAT
Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
AP015037.1:8298998-8299017
GTTAAAGGGTGGCGGAGGTGAGGAGACGAA8298998GAGGTCTTTGAGCTTGTGGCGGACGCGGGCCTCGGGGAGGGGCGCGGGAT
Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
AP015039.1:11621659-11621678
GTTAAGGGGTGGAGGAGGTGAGGAGACGAA11621659GAGGTCTTTGAGCTTGTGGCGGACGCGGGCCTCGGGGAGGGGCGGGGGAT
Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
AP015039.1:27437359-27437378
GTTAAGGGGTGGCGGAGGTGAGGAGACGAA27437359GAGGTCTTTGAGCTTGTGGCGGACGCGGGCCTCGGGGAGGGGCGGGGGAT
Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
AP015041.1:44339730-44339749
GTTAAGGGGTGGCGGAGGTGAGGAGACGAA44339730GAGGTCTTTGAGCTTGTGGCGGACGCGGGCCTTGGGGAGGGGCGGGGGAT
Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
AP015043.1:4282162-4282181
GTTAAGGGGTGGCGGAGGTGAGGAGACGAA4282162GAGGTCTTTGAGCTTGTGGCGGACGCGGGCCTCGGGGAGGGGCGCGGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCACAAGCTCAAAGACCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCACAAGCTCAAAGACCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.224 | 0.215 | search_plus_done; http://172.18.8.135:50400/match?q=GCCACAAGCTCAAAGACCTC&k=0&no_gap=0&offset=0&limit=50
0.256 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTCTTTGAGCTTGTGGC&k=0&no_gap=0&offset=0&limit=44
0.260 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).