GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 09:46:32, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum lycopersicum TYNBS1 gene for disease resistance protein, complete cds, cultivar: TY-Chie.
LC222648.1:42070-42089
GACGACAAGGGAAACCCGCAGCCTTTGGGT42070GCCACCTGGACAGTGTTTCTGGAAGGATTAAGTGATAGACGCTACATGTG
CON_327 Tomato Genome SNP,Indel Search Library Solanum lycopersicum genomic clone CON_327, genomic survey sequence.
ET165858.1:815-834
TTCATTAAATAGCATATCGGGGATGCTTCC815AGAAACACTGTCCAGGTGGCACCCAAAGGCTGCGGGTTTCCCTTGTCGTC
Solanum lycopersicum Micro-Tom DNA, chromosome 11, draft genome sequence.
AP028945.1:59939432-59939451
TTCATTAAATAGCATATCGGGGATGCTTCC59939432AGAAACACTGTCCAGGTGGCACCCAAAGGCTGCGGGTTTCCCTTGTCGTC
Solanum lycopersicum cultivar I-3 chromosome 11.
CP023767.1:54531153-54531172
TTCATTAAATAGCATATCGGGGATGCTTCC54531153AGAAACACTGTCCAGGTGGCACCCAAAGGCTGCGGGTTTCCCTTGTCGTC
Solanum lycopersicum chromosome ch11, complete genome.
HG975523.1:51611864-51611883
TTCATTAAATAGCATATCGGGGATGCTTCC51611864AGAAACACTGTCCAGGTGGCACCCAAAGGCTGCGGGTTTCCCTTGTCGTC
Solanum lycopersicum TYNBS2_Ch gene for disease resistance protein, complete cds, cultivar: TY-Chie.
LC222652.1:1202-1221
TTCATTAAATAGCATATCGGGGATGCTTCC1202AGAAACACTGTCCAGGTGGCACCCAAAGGCTGCGGGTTTCCCTTGTCGTC
Solanum lycopersicum genome assembly, chromosome: 11.
OU640354.1:55446044-55446063
TTCATTAAATAGCATATCGGGGATGCTTCC55446044AGAAACACTGTCCAGGTGGCACCCAAAGGCTGCGGGTTTCCCTTGTCGTC
Harmothoe impar genome assembly, chromosome: 15.
OX381718.1:54366998-54367017
ACCTTTAGAAATATGACCTTACATTTCAAC54366998AGAAACACTGTCCAGGTGGCAAGGTGATGACCTGATGAAGGTCTATCACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCACCTGGACAGTGTTTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCACCTGGACAGTGTTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.146 | 0.138 | search_plus_done; http://172.18.8.135:50800/match?q=GCCACCTGGACAGTGTTTCT&k=0&no_gap=0&offset=0&limit=50
0.248 | 0.101 | search_minus_done; http://172.18.8.135:50800/match?q=AGAAACACTGTCCAGGTGGC&k=0&no_gap=0&offset=0&limit=49
0.252 | 0.005 | cgi_end;

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