GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:44:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acomys dimidiatus genome assembly, chromosome: 8.
OU015381.1:30786416-30786433
GCCCCACTCATTACACCTGATTTAATGTTG30786416GCCAGCGAACTCAAATCTCACACAGCTTCCTCTTCATCTGTAAATCCA
JP 2002034597-A/4: Novel microsatellite DNA derived from pear plants and method for discriminating pear plants using the same.
BD107595.1:1-18
1GCCAGCGAACTCAAATCTCTCATCACTCTTTCTCTCTCTCTCTCTCTC
JP 2002034597-A/12: Novel microsatellite DNA derived from pear plants and method for discriminating pear plants using the same.
BD107603.1:1-18
1GCCAGCGAACTCAAATCT
Pyrus pyrifolia DNA, microsatellite marker KA16.
AB219796.1:2-19
A2GCCAGCGAACTCAAATCTCTCATCACTCTTTCTCTCTCTCTCTCTCTC
Agriphila tristella genome assembly, chromosome: 4.
OV743433.1:21942897-21942914
TGAATAGCCTAACAAGGGTAGTTGTCGCTA21942897GCCAGCGAACTCAAATCTATGGAAGTGTAATGGGAAACAAATATTGCT
Drosophila subobscura genome assembly, chromosome: E.
OY757195.1:16533438-16533455
TGCAAAAGAAAAACATCAACTATACGCTCT16533438GCCAGCGAACTCAAATCTGTTGCTTAAGCTCACACAAGAAAGTTGTTC
Drosophila subobscura genome assembly, chromosome: E.
OY757497.1:16815307-16815324
TGCAAAAGAAAAACATCAACTATACGCTCT16815307GCCAGCGAACTCAAATCTGTTGCTTAAGCTCACACAAGAAAGTTGTTC
Maratus michaelseni genome assembly, chromosome: 4.
OZ007590.1:194624375-194624392
ATTATAAAACCGCACAGTCCAATAGTGAAA194624375GCCAGCGAACTCAAATCTAATTTAATCTCAAAGTTGGCAAATTTACAA
Microcaecilia unicolor genome assembly, chromosome: 1.
LR594632.1:328994670-328994687
TAGTAGAGGACAGCAAGGGGATAAAGAAGC328994670AGATTTGAGTTCGCTGGCAGACCCAGCTCAAGGACAGCCTCAGGAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCAGCGAACTCAAATCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCAGCGAACTCAAATCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.111 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=GCCAGCGAACTCAAATCT&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=AGATTTGAGTTCGCTGGC&k=0&no_gap=0&offset=0&limit=42
0.146 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).