GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 13:50:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Equus caballus GSS, BAC clone CH241-184F14, T7 end sequence.
CU087361.1:172-191
AGAGGTGAGAAAGGAAGGATTAAACAAAAT172GCCAGGTGTGACTCCTTCTCACCATTATATTCTTCTTCTTCCACCCCTTC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6478280-6478299
TAACCTCAACCAATCAGATTCAACCAAACT6478280GCCAGGTGTGACTCCTTCTCCACCAATACCATTAAAAACTTGCCAGATGA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6713896-6713915
CAACCTCAACCAATCAGATTCAACCAAACT6713896GCCAGGTGTGACTCCTTCTCCACCAATACCATTAAAAACTTGCCAGATGA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6629884-6629903
CAACCTCAACCAATCAGATTCAACCAAACT6629884GCCAGGTGTGACTCCTTCTCCACCAATACCATTAAAAACTTGCCAGATGA
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6420030-6420049
CAACCTCAACCAATCAGATTCAACCAAACT6420030GCCAGGTGTGACTCCTTCTCCACCAATACCATTAAAAACTTGCCAGATGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:40123343-40123362
TCATCTGGCAAGTTTTTAATGGTATTGGTG40123343GAGAAGGAGTCACACCTGGCAGTTTGGTTGAATCTGATTGGTTGAGGTTG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36825677-36825696
TCATCTGGCAAGTTTTTAATGGTATTGATG36825677GAGAAGGAGTCACACCTGGCAGTTTGGTTGAATCTGATTGGTTGAGGTTG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40424924-40424943
TCATCTGGCAAGTTTTTAATGGTATTGGTG40424924GAGAAGGAGTCACACCTGGCAGTTTGGTTGAATCTGATTGGTTGAGGTTG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39721784-39721803
TCATCTGGCAAGTTTTTAATGGTATTGGTG39721784GAGAAGGAGTCACACCTGGCAGTTTGGTTGAATCTGATTGGTTGAGGTTG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39276192-39276211
TCATCTGGCAAGTTTTTAATGGTATTGGTG39276192GAGAAGGAGTCACACCTGGCAGTTTGGTTGAATCTGATTGGTTGAGGTTG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39739902-39739921
TCATCTGGCCAGTTTTTAATGGTATTGGTG39739902GAGAAGGAGTCACACCTGGCAGTTTGGTTGAATCTGATTGGTTGAGGTTG
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40572342-40572361
TCATCTGGCAAGTTTTTAATGGTATTGGTG40572342GAGAAGGAGTCACACCTGGCAGTTTGGTTGAATCTGATTGGTTGAGGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCAGGTGTGACTCCTTCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCAGGTGTGACTCCTTCTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=GCCAGGTGTGACTCCTTCTC&k=0&no_gap=0&offset=0&limit=50
0.423 | 0.273 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAAGGAGTCACACCTGGC&k=0&no_gap=0&offset=0&limit=45
0.428 | 0.004 | cgi_end;

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