GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:20:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:32273573-32273592
AATTTGGATTATTAGCCAGTAATGTCCACA32273573GCCATAGCTTCACACCTAACTGATCTGACCAAGTCAGTATCATCAACCGC
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:21033314-21033333
AATTTGGATTATTAGACAGTACTGTCCACA21033314GCCATAGCTTCACACCTAACTGATCTGACCAAGTCAGTATCACCACTCTT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:21057068-21057087
AATTTGGATTATTAGCCAGTACTGTCCACA21057068GCCATAGCTTCACACCTAACTGATCTGACCAAGTCAGTATCATCAACCGT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:8696258-8696277
GCGGTTGATGATACTGACTTGGTCAGATCA8696258GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:9545193-9545212
GCGGTTGATGATACTGACTTGGTCAGATCA9545193GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:8911073-8911092
GCGGTTGATGATACTGACTTGGTCAGATCA8911073GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:9607637-9607656
GCGGTTGATGATACTGACTTGGTCAGATCA9607637GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:8849157-8849176
GCGGTTGATGATACTGACTTGGTCAGATCA8849157GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:9013896-9013915
GCGGTTGATGATACTGACTTGGTCAGATCA9013896GTTAGGTGTGAAGCTATGGCTGTGGACAGTACTGGCTAATAATCCAAATT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:9007212-9007231
GCGGTTGATGATACTGACTTGGTCAGATCA9007212GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:9646446-9646465
GCGGTTGATGATACTGACTTGGTCAGATCA9646446GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:9535959-9535978
GCGGTTGATGATACTGACTTGGTCAGATCA9535959GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:9474762-9474781
GCGGTTGATGATACTGACTTGGTCAGATCA9474762GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:9410200-9410219
GCGGTTGATGATACTGACTTGGTCAGATCA9410200GTTAGGTGTGAAGCTATGGCTGTGGACATTACTGGCTAATAATCCAAATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCATAGCTTCACACCTAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCATAGCTTCACACCTAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.317 | 0.308 | search_plus_done; http://172.18.8.135:50400/match?q=GCCATAGCTTCACACCTAAC&k=0&no_gap=0&offset=0&limit=50
0.405 | 0.088 | search_minus_done; http://172.18.8.135:50400/match?q=GTTAGGTGTGAAGCTATGGC&k=0&no_gap=0&offset=0&limit=47
0.413 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).