GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:22:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3020 from patent US 8692064.
HJ926875.1:1700-1719
TCAATTTCAAGTTTTGGCAGAGAAGTTCTC1700GCCATGCAGAAGAAGTAGCCACACAGAAGACTCAATCAACTTAA
sf14c05.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-2241 5', mRNA sequence.
AW202372.1:175-194
TCAATTTCAAGTTTTGGCAGAGAAGTTCTC175GCCATGCAGAAGAAGTAGCCACACAGAAGACTCAATCAACTTAAGTCTAT
sac90a07.y1 Gm-c1073 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1073-38 5' similar to TR:O22848 O22848 MEMBRANE TRANSPORTER D1 ISOLOG, mRNA sequence.
BG508759.1:309-328
TCAATTTCAAGTTTTGGCAGAGAAGTTCTC309GCCATGCAGAAGAAGTAGCCACACAGAAGACTCAATCAACTTAAGTCTAT
Bacteroides caecimuris strain I48 chromosome, complete genome.
CP015401.2:3234624-3234643
CCGAAAACATAGCTGTACTGGCAGGTCCCT3234624GCCATGCAGAAGAAGTAGCCTTGGAACGCCTCTCTTATCTGACCATTGCC
Abyssalbus ytuae strain MT3330 chromosome, complete genome.
CP094358.1:1867220-1867239
TTGAGAATATTGGTGTTATTACGGGGCCAT1867220GCCATGCAGAAGAAGTAGCCCTTGAAAGACTTTCGTACATTACTGTAGCC
Cerceris rybyensis genome assembly, chromosome: 1.
OU342789.1:26884450-26884469
TATTCGCTGGATTGCCGTAGCATTATTATT26884450GCCATGCAGAAGAAGTAGCCGATAGGTACCGCTAAATACCAGGCCGTGAG
Sylvilagus floridanus genome assembly, chromosome: 5.
OX463227.1:34140126-34140145
GATTACACTTCCAGAAATAAATTCTGTTTT34140126GGCTACTTCTTCTGCATGGCAAATTACTCCAACACCTAGCGACTTAAAGA
GM880005B20F01 Gm-r1088 Glycine max cDNA clone Gm-r1088-1802 3', mRNA sequence.
BU545489.1:216-235
ATAGACTTAAGTTGATTGAGTCTTCTGTGT216GGCTACTTCTTCTGCATGGCGAGAACTTCTCTGCCAAAACTTGAAATTGA
Glycine max cultivar Williams 82 chromosome 8.
CP126433.1:7590474-7590493
ATAGACTTAAGTTGATTGAGTCTTCTGTGT7590474GGCTACTTCTTCTGCATGGCGAGAACTTCTCTGCCAAAACTTGAAATTGA
Bacteroides caecimuris strain I48 chromosome.
CP065319.1:3765172-3765191
GGCAATGGTCAGATAAGAGAGGCGTTCCAA3765172GGCTACTTCTTCTGCATGGCAGGGACCTGCCAGTACAGCTATGTTTTCGG
Pedobacter sp. D749 chromosome, complete genome.
CP079218.1:3941720-3941739
GGCAATAGTTAGGTAAGAAAGTTTCTCAAA3941720GGCTACTTCTTCTGCATGGCAGGGGCCGCTTACCACAAGAATATCGTGAT
Pedobacter mucosus strain Q8-18 chromosome, complete genome.
CP087585.1:3286780-3286799
GGCAATTGTTAGGTAAGAAAGTTTTTCAAA3286780GGCTACTTCTTCTGCATGGCAAGGTCCACTAACCACTAAAATATCATGGT
Bacteroides caecimuris strain I48 chromosome.
CP096969.1:3781625-3781644
GGCAATGGTCAGATAAGAGAGGCGTTCCAA3781625GGCTACTTCTTCTGCATGGCAGGGACCTGCCAGTACAGCTATGTTTTCGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCATGCAGAAGAAGTAGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCATGCAGAAGAAGTAGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.154 | 0.146 | search_plus_done; http://172.18.8.135:50400/match?q=GCCATGCAGAAGAAGTAGCC&k=0&no_gap=0&offset=0&limit=50
0.191 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=GGCTACTTCTTCTGCATGGC&k=0&no_gap=0&offset=0&limit=44
0.196 | 0.005 | cgi_end;

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