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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:09:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Balaenoptera acutorostrata genome assembly, chromosome: 5.
OX465354.1:70345181-70345200
TTGCTGCGTGCTCCTCTTTGTCACATAATG70345181GCCATGCTGAGCAAAGAAGTCCCTGTGAGCGCAAAGAAGAAAAGACACAC
Sequence 181343 from Patent EP2090662.
HB832129.1:442-461
ACGGTGGCGGTTGGATCTTTGTTGACAGGT442GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 181427 from Patent EP2090662.
HB832213.1:500-519
ACGGTGGCGGTTGGATCTTTGTTGACAGGT500GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 181429 from Patent EP2090662.
HB832215.1:500-519
ACGGTGGCGGTTGGATCTTTGTTGACAGGT500GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 1376 from patent US 10760088.
MV631115.1:472-491
ACGGTGGCGGTTGGATCTTTGTTGACAGGT472GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 1378 from patent US 10760088.
MV631117.1:521-540
ACGGTGGCGGTTGGATCTTTGTTGACAGGT521GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 1380 from patent US 10760088.
MV631119.1:202-221
ACGGTGGCGGTTGGATCTTTGTTGACAGGT202GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 1376 from patent US 11111499.
MY422998.1:472-491
ACGGTGGCGGTTGGATCTTTGTTGACAGGT472GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 1378 from patent US 11111499.
MY423000.1:521-540
ACGGTGGCGGTTGGATCTTTGTTGACAGGT521GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Sequence 1380 from patent US 11111499.
MY423002.1:202-221
ACGGTGGCGGTTGGATCTTTGTTGACAGGT202GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
BR075035 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-052E07 5', mRNA sequence.
EX088745.1:525-544
ACGGTGGCGGTTGGATCTTTGTTGACAGGT525GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_24079.
FX706370.1:515-534
ACGGTGGCGGTTGGATCTTTGTTGACAGGT515GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10440.
FX728779.1:528-547
ACGGTGGCGGTTGGATCTTTGTTGACAGGT528GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Brassica napus mRNA for sulphate transporter (bst3.1 gene).
AJ581745.1:521-540
ACGGTGGCGGTTGGATCTTTGTTGACAGGT521GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:14956966-14956985
ACGGTGGCGGTTGGATCTTTGTTGACAGGT14956966GCCATGCTGAGCAAAGAAGTTGACGCTGAGAAAGATCCTAAGCTCTACCT
Lunularia cruciata genome assembly, chromosome: 8.
OX419762.1:22907297-22907316
GAAGTAGAAGGTGTTGTTAATGAAATTAAG22907297GCCATGCTGAGCAAAGAAGTGGAGTGTAAACTCAAAGAAGCGAGGCTGCA
BNSCSICT_UP_026_D04_14DEC2004_026 Brassica napus seed coat BNSCSICT Brassica napus cDNA 5', mRNA sequence.
DY011533.1:170-189
AGGTAGAGCTTAGGATCTTTCTCAGCGTCA170ACTTCTTTGCTCAGCATGGCACCTGTCAACAAAGATCCAACCGCCACCGT
KBrB004F11F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB004F11, genomic survey sequence.
DX013206.1:439-458
AGGTAGAGCTTAGGATCTTTCTCAGCGTCA439ACTTCTTTGCTCAGCATGGCACCTGTCAACAAAGATCCAACCGCCACCGT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:57704782-57704801
AGGTAGAGCTTAGGATCTTTCTCAGCGTCA57704782ACTTCTTTGCTCAGCATGGCACCTGTCAACAAAGATCCAACCGCCACCGT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:41588029-41588048
AGGTAGAGCTTAGGATCTTTCTCAGCGTCA41588029ACTTCTTTGCTCAGCATGGCACCTGTCAACAAAGATCCAACCGCCACCGT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:26853451-26853470
AGGTAGAGCTTAGGATCTTTCTCAGCGTCA26853451ACTTCTTTGCTCAGCATGGCACCTGTCAACAAAGATCCAACCGCCACCGT
Brassica rapa genome, scaffold: A09.
LR031568.1:45913998-45914017
AGGTAGAGCTTAGGATCTTTCTCAGCGTCA45913998ACTTCTTTGCTCAGCATGGCACCTGTCAACAAAGATCCAACCGCCACCGT
Arabidopsis arenosa genome assembly, chromosome: 5.
LR999455.1:11735472-11735491
ACGTAAAGCTTAGGATCTTTCTCAGCATCG11735472ACTTCTTTGCTCAGCATGGCACCTGTCAAAAGAGACGCAACCGCAACCGT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:56374569-56374588
AGGTAGAGCTTAGGATCTTTCTCAGCGTCA56374569ACTTCTTTGCTCAGCATGGCACCTGTCAACAAAGATCCAACCGCCACCGT
Cardamine flexuosa genome assembly, chromosome: 5.
OY743218.1:19589961-19589980
AGGTAAAGCTTAGGAAATTTCTCAGCATCT19589961ACTTCTTTGCTCAGCATGGCACCTGTCAACAGAGATCCAACCGCCACAGT
Barbarea vulgaris genome assembly, chromosome: 2.
OY763888.1:28533657-28533676
AGGTAAAGCTTAGGATCTTTCTCAGCATCA28533657ACTTCTTTGCTCAGCATGGCACCTGTCAACAGAGATGCAACCGCCACAGT
Macrobrachium nipponense isolate FS-2020 chromosome 23.
CP062038.1:15515116-15515135
CCCGGTGACCGATCCCTGACGATCTCCACA15515116ACTTCTTTGCTCAGCATGGCTTGGACTTCCTGCCGAAGTGCTACATCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCATGCTGAGCAAAGAAGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCATGCTGAGCAAAGAAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.554 | 0.545 | search_plus_done; http://172.18.8.135:50400/match?q=GCCATGCTGAGCAAAGAAGT&k=0&no_gap=0&offset=0&limit=50
0.691 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=ACTTCTTTGCTCAGCATGGC&k=0&no_gap=0&offset=0&limit=34
0.698 | 0.007 | cgi_end;

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