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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:05:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum melongena mRNA, clone: PED02K20, 3'end, expressed in peduncle at anthesis.
FS034234.1:252-272
AGCTAGCCCTCTAGTTTAAAGTTTAATATA252GCCATTCTTGATCATCCACTCCATACTCCAATGATTGTTGACATTTTTGAG
Solanum torvum mRNA, clone: TVR13J12, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS112225.1:182-202
ATTAGTGAAAAAAGATTAAAGTTTAATGTA182GCCATTCTTGATCATCCACTCCATACTCCAATGGTTGTTGACATTTTTTAG
Solanum torvum mRNA, clone: TVR28C13, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS120860.1:158-178
ATTAGTGAAAAAAGATTAAAGTTTAATGTA158GCCATTCTTGATCATCCACTCCATACTCCAATGGTTGTTGACATTTTTTAG
NBERO1CH_T3_003_G03_28APR2006_019 NBERO1CH Nicotiana benthamiana cDNA, mRNA sequence.
GO600426.1:527-547
AATGATCTGAGTAATTTAAAGCTTGATATA527GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTGTTCACATTTTTGAG
NTAT217 Nicotiana tabacum supression subtractive hybridization library Nicotiana tabacum cDNA, mRNA sequence.
HO059540.1:103-123
AATAATCTGAGTAATTTAAAGCTTGATATA103GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTGTTCACATTTTTGAG
Subs49B9 Tobacco basal resistance related ESTs Nicotiana tabacum cDNA, mRNA sequence.
JZ124467.1:58-78
AATAATCTGAGTAATTTAAAGCTTGATATA58GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTGTTCACATTTTTGAG
CHO_OF737xh18r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET813694.1:206-226
AATAATTTGAGTAATTTAAAGCTTGATATA206GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTGTTCACATTTTTGAG
Quercus dentata isolate Qdleaves-2020 chromosome 12.
CP116455.1:37304643-37304663
CACCTTAACTCTAAACTAAAGTTTGATATA37304643GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Quercus dentata isolate Qdleaves-2020 chromosome 12.
CP116455.1:37327892-37327912
CACCTTAATTCTAAACTAAAGTTTGATATA37327892GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:29286428-29286448
TTATTTTTTCATAAATTAAAGCTTGATATA29286428GCCATTCTTGATCATCCACTCCATACTCCAATGATTGTTCACATTTTTTAA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:29363715-29363735
AGGAATCTAAATAAATTAAAGCTTGATATA29363715GCCATTCTTGATCATCCACTCCATACTCCAATGATTGTTCACATTTTTTAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:238743269-238743289
GTAATTTTTCAAAAATTAAAGCGTGATATA238743269GCCATTCTTGATCATCCACTCCATACTCCAATGATTGATCACATTTTTTAG
Quercus variabilis isolate HB chromosome 12b.
CP129444.1:31847238-31847258
CACCTTAATTCTAAACTAAAGTTTGATATG31847238GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Quercus variabilis isolate HB chromosome 12b.
CP129444.1:31869918-31869938
CACCTTAATTCTAAACTAAAGTTTGATATA31869918GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Quercus variabilis isolate HB chromosome 12b.
CP129444.1:31891780-31891800
CACCTTAATTCTAAACTAAAGTTTGATATA31891780GCCATTCTTGATCATCCACTCCAAACTCCAAGGGTTATTGACATTTTTAAG
Quercus variabilis isolate HB chromosome 12a.
CP129456.1:32199492-32199512
CACCTTAATTCTAAACTAAAGTTTGATATG32199492GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Quercus variabilis isolate HB chromosome 12a.
CP129456.1:32218453-32218473
CACCTTAATTCTAAACTAAAGTTTGATATA32218453GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Quercus variabilis isolate HB chromosome 12a.
CP129456.1:32239458-32239478
CACCTTAATTCTAAACTAAAGTTTGATGTA32239458GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Solanum dulcamara genome assembly, chromosome: 1.
OX359252.1:82054271-82054291
AATCAAAAATAAAGATTAAAGTTTGATATA82054271GCCATTCTTGATCATCCACTCCATACTCCAATGGTTGTCCACATTTTTAAA
Populus nigra genome assembly, chromosome: 5.
OX637676.1:7774428-7774448
ATTCCGTGTTGAAATCTATATCTGGATGTA7774428GCCATTCTTGATCATCCACTCCAGGCTCCAATGATTGTTTACATTCTTTAG
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:8347203-8347223
TGATAATGTTACAATTTAAAGCTTGATGTA8347203GCCATTCTTGATCATCCACTCAAGACTCCAGTGATTGTTCACATTCTTTAG
Quercus cerris genome assembly, chromosome: 12.
OY770017.1:32149579-32149599
CACTTTAATACTAAACTAACGTTTGATATA32149579GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Quercus cerris genome assembly, chromosome: 12.
OY770017.1:32163346-32163366
CACCTTAATTCTAAACTAAAGTTTGATATA32163346GCCATTCTTGATCATCCACTCCAAACTCCAATGGTTATTGACATTTTTAAG
Quercus cerris genome assembly, chromosome: 12.
OY770017.1:32183435-32183455
CACCTTAATTCTAAACTAAAGTTTGATATA32183435GCCATTCTTGATCATCCACTCCAAACTCCAACGGTTATTGACATTTTTAAG
Quercus cerris genome assembly, chromosome: 12.
OY770017.1:32205684-32205704
CACCTTAATTCTAAACTAAAGTTTGATATA32205684GCCATTCTTGATCATCCACTCCAAACTCCAAGGGTTATTGACATTTTTAAG
Quercus robur EST, clone WZ0AQRAM1YK18FM1.
FN771505.1:409-429
CTTAAAAATGTCAATAACCATTGGAGTTTG409GAGTGGATGATCAAGAATGGCTATATCAAACTTTAGTTTAGAATT
TSA: Psychotria gabriellae, clone contig_9459.
HE830689.1:642-662
TTCAAAAATGTAAACAACCACTGGAGTTTG642GAGTGGATGATCAAGAATGGCTATATCAATCTTTAGGTTCTAAATGTGGCT
TSA: Petunia axillaris PETAX023247:Contig1 mRNA sequence.
JI343919.1:229-249
TTAAAAAATGTGAACAACCATTGGAGTATG229GAGTGGATGATCAAGAATGGCTATATCAAGCTTTAAGTTATTCAGATTGAT
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:16299564-16299584
CTAAAAAATGTGATCAATCATTGGAGTATG16299564GAGTGGATGATCAAGAATGGCTATATCACGCTTTAATTTTTGAAAAATTAC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:9090965-9090985
TTAAAAAATGTGAACAATCATTGGAGTATG9090965GAGTGGATGATCAAGAATGGCTATATCAAGCTTTAATTTATTTAGATTCTT
Quercus robur genome assembly, chromosome: 12.
OW028776.1:7502761-7502781
CTTAAAAATGTCAATAACCATTGGAGTTTG7502761GAGTGGATGATCAAGAATGGCTATATCAAACTTTAGTTTAGAATTAAGGTG
Quercus robur genome assembly, chromosome: 12.
OW028776.1:7526039-7526059
CTTAAAAATGTCAATAACCATTGGAGTTTG7526039GAGTGGATGATCAAGAATGGCTATATCAAACTTTAGTTTAGAATTAAGGTG
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:359016-359036
CTAAAGAATGTGAACAATCACTGGAGTCTC359016GAGTGGATGATCAAGAATGGCTACATCAAGCTTTAAATTGTAACATTATCA
Viola odorata genome assembly, chromosome: 5.
OY829541.1:45554266-45554286
CTCAAGAATGTTAACAACCATTGGAGCATG45554266GAGTGGATGATCAAGAATGGCTACATCAAGCTTTAAACTTTTAACTCATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCATTCTTGATCATCCACTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCATTCTTGATCATCCACTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.562 | 0.553 | search_plus_done; http://172.18.8.135:50400/match?q=GCCATTCTTGATCATCCACTC&k=0&no_gap=0&offset=0&limit=50
0.673 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=GAGTGGATGATCAAGAATGGC&k=0&no_gap=0&offset=0&limit=25
0.679 | 0.006 | cgi_end;

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