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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR1D558JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY893548.1:291-310
CTTTCTCAGCGGAGAGAAGCTCAGGCCACC291GCCGTCACCCTTTTCATCTATCTCTGGCGCTCTGTCTTCTCTATCTCTGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8806.
FX680773.1:290-309
CTTTCTCAGCGGAGAGAAGCTCAGGCCACC290GCCGTCACCCTTTTCATCTATCTCCGGCGCTCTGCTCTGAATCTGGAAAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_34186.
FX684537.1:126-145
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC126GCCGTCACCCTTTTCATCTATCTCCTGCGTTCTGTCTTCTCTATCTCTGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_31119.
FX684722.1:126-145
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC126GCCGTCACCCTTTTCATCTATCTCCTGCGCTCTGTCTTCTCTATCTCTGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_32446.
FX795472.1:243-262
CTTTCTCAGCGGAGAGAAGCTCAGGCCACC243GCCGTCACCCTTTTCATCTATCTCCGGCGCTCTGCTCTGAATCAGTGTGG
TSA: Raphanus sativus RS06038 mRNA sequence.
JT790585.1:307-326
CTTTCTCAGCGGAGAGAAGCTTAGGCCACC307GCCGTCACCCTTTTCATCTATCTCCGGCGCTCTGCTCTGAATCTGGAAAG
TSA: Raphanus sativus RS06039 mRNA sequence.
JT790586.1:1741-1760
CTTTCTCAGCGGAGAGAAGCTTAGGCCACC1741GCCGTCACCCTTTTCATCTATCTCCGGCGCTCTGCTCTGAATCTGGAAAG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:3739360-3739379
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC3739360GCCGTCACCCTTTTCATCTATCTCCTGCGCTCTGTCTTCTCTATCTCTGT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:53351072-53351091
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC53351072GCCGTCACCCTTTTCATCTATCTCCTGCGTTCTGTCTTCTCTATCTCTGT
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:41537123-41537142
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC41537123GCCGTCACCCTTTTCATCTATCTCCTGCGTTCTGTCTTCTCTATCTCTGT
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:41537123-41537142
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC41537123GCCGTCACCCTTTTCATCTATCTCCTGCGTTCTGTCTTCTCTATCTCTGT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:20222958-20222977
CTTTCTCAGCGGAGAGAAGCTCAGGCCACC20222958GCCGTCACCCTTTTCATCTATCTCCGGCGCTCTGCTCTGAATCTGGAAAG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:3739360-3739379
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC3739360GCCGTCACCCTTTTCATCTATCTCCTGCGCTCTGTCTTCTCTATCTCTGT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:53351072-53351091
CTTTCTCAGCGGAGAAAAGCTCAGGCCACC53351072GCCGTCACCCTTTTCATCTATCTCCTGCGTTCTGTCTTCTCTATCTCTGT
RR1D558TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY897157.1:223-242
ACAGAGATAGAGAAGACAGAGCGCCAGAGA223TAGATGAAAAGGGTGACGGCGGTGGCCTGAGCTTCTCTCCGCTGAGAAAG
Raphanus sativus mRNA, clone: RSCR12D11, 5' end sequence.
FY443460.1:178-197
CCACACTGATTCAGAGCAGAGCGCCGGAGA178TAGATGAAAAGGGTGACGGCGGTGGCCTGAGCTTCTCTCCGCTGAGAAAG
Raphanus sativus mRNA, clone: RSCS02M08, 5' end sequence.
FY446811.1:337-356
CTTTCCAGATTCAGAGCAGAGCGCCGGAGA337TAGATGAAAAGGGTGACGGCGGTGGCCTAAGCTTCTCTCCGCTGAGAAAG
Raphanus sativus cultivar WK10039 clone RsH001J10, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC255294.1:28245-28264
ACAGAGATAGAGAAGACAGAGCGCAGGAGA28245TAGATGAAAAGGGTGACGGCGGTGGCCTGAGCTTTTCTCCGCTGAGAAAG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:23243983-23244002
CTTTCCAGATTCAGAGCAGAGCGCCGGAGA23243983TAGATGAAAAGGGTGACGGCGGTGGCCTAAGCTTCTCTCCGCTGAGAAAG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:23809992-23810011
CTTTCCAGATTCAGAGCAGAGCGCCGGAGA23809992TAGATGAAAAGGGTGACGGCGGTGGCCTGAGCTTCTCTCCGCTGAGAAAG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:23243983-23244002
CTTTCCAGATTCAGAGCAGAGCGCCGGAGA23243983TAGATGAAAAGGGTGACGGCGGTGGCCTAAGCTTCTCTCCGCTGAGAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCGTCACCCTTTTCATCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCGTCACCCTTTTCATCTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.412 | 0.403 | search_plus_done; http://172.18.8.135:50400/match?q=GCCGTCACCCTTTTCATCTA&k=0&no_gap=0&offset=0&limit=50
0.808 | 0.397 | search_minus_done; http://172.18.8.135:50400/match?q=TAGATGAAAAGGGTGACGGC&k=0&no_gap=0&offset=0&limit=36
0.813 | 0.005 | cgi_end;

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