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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 11:33:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

uncultured Pseudodesulfovibrio sp. isolate 71fa3a25-14da-4668-b662-1cbcee8d8297 genome assembly, chromosome: 1.
OY761823.1:1330394-1330412
TATGGGGAATCTGGTGAACAAGGCCTGCTC1330394GCCGTGTCATTCCACAAAGCGAATCTGCCTGAATGTCGGCGTCAAGAGC
Arachis hypogaea DNA, clone: 8iHA00A30, cultivar: YI-0311.
DE998452.1:29-47
TGTTTAGCCTTGTAGCGGAACCCCTACT29GCCGTGTCATTCCACAAAGATGAAAAAGCTGTTGAATACAATGGATATA
Arachis hypogaea cultivar Shitouqi chromosome A09.
CP030991.1:113785961-113785979
ACTTATCAGTGGACGTATATATGGCCTACT113785961GCCGTGTCATTCCACAAAGATGAAAAAGTTGTTGAATACAATGGATATA
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:155576945-155576963
TATATCCATTGTATTCAACAGCTTTTTCAT155576945CTTTGTGGAATGACACGGCAGTAGGCCATATATACGTCCACTGATAAGT
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:154292501-154292519
TATATCCATTGTATTCAACAGCTTTTTCAT154292501CTTTGTGGAATGACACGGCAGTAGGCCATATATACGTCCACTGATAAGT
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:9931061-9931079
CACAAAGATTTGACGAGCGTGGAAGGGAAC9931061CTTTGTGGAATGACACGGCCACCGTGCATCGGGCCTGCTCGCATGTGTG
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:9969399-9969417
CACAAAGATTTGACGAGCGTGGAAGGGAAC9969399CTTTGTGGAATGACACGGCCACCGTGCATCGGGCCTGCTCGCATGTGTG
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:9990759-9990777
CACAAAGATTTGACGAGCGTGGAAGGGAAC9990759CTTTGTGGAATGACACGGCCACCGTGCATCGGGCCTGCTCGCATGTGTG
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:10011080-10011098
CACAAAGATTTGACGAGCGTGGAAGGGAAC10011080CTTTGTGGAATGACACGGCCACCGTGCATCGGGCCTGCTCGCATGTGTG
Avena sativa genome assembly, chromosome: 6C.
OU342390.1:375522456-375522474
TGTGAGGATAGCCATATCTCAGAATGATAT375522456CTTTGTGGAATGACACGGCTGTAGCTCCATCACATTTTCTTATCGGCTT
Avena sativa genome assembly, chromosome: 13.
OV702291.1:406576013-406576031
TGTGAGGATAGCCATATCTCAGAATGATAT406576013CTTTGTGGAATGACACGGCTGTAGCTCCATCACATTTTCTTATCGGCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCGTGTCATTCCACAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCGTGTCATTCCACAAAG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.181 | 0.173 | search_plus_done; http://172.18.8.135:50400/match?q=GCCGTGTCATTCCACAAAG&k=0&no_gap=0&offset=0&limit=50
0.261 | 0.080 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGTGGAATGACACGGC&k=0&no_gap=0&offset=0&limit=47
0.267 | 0.006 | cgi_end;

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