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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:36:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Camellia sinensis mRNA, clone: RT27E07, unspecified EST, sequenced using T7 primer, expressed in roots.
FS950305.1:133-152
GGAGCACTTTGTTTAAAACTACATAAAAAA133GCCTCCATTGAACCAGCACACAAGACAAAAGCGTAAATTTCCAAACCAGA
TSA: Camellia sinensis tea_rep_c446 mRNA sequence.
KA279889.1:252-271
GGAGCACTTTGTTTAAAACTACATAAAAAA252GCCTCCATTGAACCAGCACACAAGACAAAAGCGTAAATTTCGAAACCAGA
TSA: Camellia sinensis tea_rep_c2105 mRNA sequence.
KA281540.1:268-287
GGAGCACTTTGTTTAAAACTACATAAAAAA268GCCTCCATTGAACCAGCACACAAGACAAAAGCGTAAATTTCCAAACCAGA
Camellia sinensis mRNA, clone: RT4A01, unspecified EST, sequenced using T7 primer, expressed in roots.
FS951344.1:281-300
TCTGGTTTGGAAATTTACGCTTTTGTCTTG281TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
Camellia sinensis mRNA, clone: YL11B12, 5' end sequence, expressed in young leaves.
FS959344.1:186-205
TCTGGTTTGGAAATTTACGCTTTTGTCTTG186TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST0665 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_03_08.M13+_H01.ab1, mRNA sequence.
GE650338.1:713-732
TTCTGGTTTGGAAATTTACGCTTTTGTCTG713TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACA
EST0813 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_05_12.M13+_D02.ab1, mRNA sequence.
GE650486.1:713-732
TCTGGTTTGGAAATTTACGCTTTTGTCTTG713TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST0909 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_06_44.M13+_D06.ab1, mRNA sequence.
GE650582.1:711-730
TCTGGTTTGGAAATTTACGCTTTTGCCTTG711TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST0932 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_06_73.M13+_A10.ab1, mRNA sequence.
GE650605.1:710-729
TCTGGTTTGGAAATTTACGCTTTTGTCTTG710TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST1028 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_09.M13+_A02.ab1, mRNA sequence.
GE650701.1:713-732
TCTGGTTTGGAAATTTACGCTTTTGTCTTG713TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAGTGCTCCT
EST2234 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_24_13.M13+_E02.ab1, mRNA sequence.
GE651907.1:501-520
TCTGGTTTGGAAATTTACGCTTTTGTCTTG501TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST2504 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_27_57.M13+_A08.ab1, mRNA sequence.
GE652177.1:421-440
TCTGGTTTGGAAATTTACGCTTTTGTCTTG421TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST2604 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_28_69.M13+_E09.ab1, mRNA sequence.
GE652277.1:711-730
TCTGGTTTGGAAATTTACGCTTTTGTCTTG711TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST3015 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_35_75.M13+_C10, mRNA sequence.
GE652688.1:710-729
TCTGGTTTGGAAATTTACGCTTTTGTCTTG710TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
EST3028 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_36_08.M13+_H01, mRNA sequence.
GE652701.1:712-731
TCTGGTTTGGAAATTTACGCTTTTGTCTTG712TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAGTGCTCCT
EST3072 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_36_68.M13+_D09, mRNA sequence.
GE652745.1:599-618
TCTGGTTTGGAAATTTACGCTTTTGTCTTG599TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
SSH30 SSH library of leaves induced by Ectropic oblique feeding Camellia sinensis cDNA clone CS30, mRNA sequence.
GW342644.1:284-303
TCTGGTTTGGAAATTTACGCTTTTGTCCTG284TGTGCTGGTTCAATGGAGGCTTTTTTATGTAGTTTTAAACAAAGTGCTCC
TSA: Camellia sinensis tea_rep_c47 mRNA sequence.
KA279490.1:670-689
TCTGGTTTGGAAATTTACGCTTTTGTCTTG670TGTGCTGGTTCAATGGAGGCTTTTTTATGTTAAAAGTTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCCTCCATTGAACCAGCACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCTCCATTGAACCAGCACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.306 | 0.297 | search_plus_done; http://172.18.8.135:50400/match?q=GCCTCCATTGAACCAGCACA&k=0&no_gap=0&offset=0&limit=50
1.736 | 1.431 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGCTGGTTCAATGGAGGC&k=0&no_gap=0&offset=0&limit=47
1.746 | 0.010 | cgi_end;

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