GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:03:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus communis mRNA, contig: lc31862.
FX639931.1:107-126
CCGTGCACCAGAGTTGGCTGCTTCCAAGAA107GCCTCTTCCCTCCTTCAAGTCAGATATTTACGCCNTTGGAGTGATAATGC
Macaca fuscata fuscata DNA, clone: MSB2-120D02_F, genomic survey sequence.
AG687912.1:656-675
TATGTTGGAAGCCTTTATCCTTTAGCCCCC656GCCTCTTCCCTCCTTCAAGTTCGGCTGCTTTCCCAATTCCCCTTTCTTCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:7099700-7099719
CCGCGCACCAGAGTTGGCTGCTTCCAAGAA7099700GCCTCTTCCCTCCTTCAAGTCAGATATTTACGCCTTTGGAGTGATAATGC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6785736-6785755
CCGTGCACCAGAGTTGGCTGCTTCCAAGAA6785736GCCTCTTCCCTCCTTCAAGTCAGATATTTACGCCTTTGGAGTGATAATGC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:7263594-7263613
CCGTGCACCAGAGTTGGCTGCTTCCAAGAA7263594GCCTCTTCCCTCCTTCAAGTCAGATATTTACGCCTTTGGAGTGATAATGC
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:7092789-7092808
CCGTGCACCAGAGTTGGCTGCTTCCAAGAA7092789GCCTCTTCCCTCCTTCAAGTCAGATATTTACGCCTTTGGAGTGATAATGC
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:7472752-7472771
CCGTGCACCAGAGTTGGCTGCTTCCAAGAA7472752GCCTCTTCCCTCCTTCAAGTCAGATATTTACGCCTTTGGAGTGATAATGC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5765189-5765208
CCGTGCACCAGAGTTGGCTGCTTCCAAGAA5765189GCCTCTTCCCTCCTTCAAGTCAGATATTTACGCCTTTGGAGTGATAATGC
TSA: Pyrus x bretschneideri Unigene25938_XinShao mRNA sequence.
JR619480.1:510-529
GCATTATCACTCCAAAGGCGTAAATATCTG510ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39444377-39444396
GCATTATCACTCCAAAGGCGTAAATATCTG39444377ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36185378-36185397
GCATTATCACTCCAAAGGCGTAAATATCTG36185378ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:39749778-39749797
GCATTATCACTCCAAAGGCGTAAATATCTG39749778ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39076104-39076123
GCATTATCACTCCAAAGGCGTAAATATCTG39076104ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:38631909-38631928
GCATTATCACTCCAAAGGCGTAAATATCTG38631909ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39089643-39089662
GCATTATCACTCCAAAGGCGTAAATATCTG39089643ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39898781-39898800
GCATTATCACTCCAAAGGCGTAAATATCTG39898781ACTTGAAGGAGGGAAGAGGCTTCTTGGAAGCAGCCAACTCTGGTGCACGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCTCTTCCCTCCTTCAAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCTCTTCCCTCCTTCAAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=GCCTCTTCCCTCCTTCAAGT&k=0&no_gap=0&offset=0&limit=50
0.146 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=ACTTGAAGGAGGGAAGAGGC&k=0&no_gap=0&offset=0&limit=42
0.151 | 0.005 | cgi_end;

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