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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:11:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH029_07004m, 5' end sequence.
AB450710.1:293-315
ATTAGATATATATAATCCTTTCACGTAGAT293GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
SPFV11 Supression Substractive Hybridization cDNA library of pear inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GO924812.1:145-167
ATTAGATATATATAATCCTTTCACGTAGAT145GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
SPFV37 Supression Substractive Hybridization cDNA library of pear inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GO924834.1:179-201
ATTAGATATATATAATCCTTTCACGTAGAT179GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
SPFV48 Supression Substractive Hybridization cDNA library of pear inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GO924844.1:123-145
ATTAGATATATATAATCCTTTCACGTAGAT123GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
Pyrus pyrifolia mRNA, clone: NFW2_18_04, 5' end sequence, expressed in flower bud.
HX763404.1:292-314
ATTAGATATATATAATCCTTTCACGTAGAT292GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
Pyrus pyrifolia mRNA, clone: NFW2_18_58, 5' end sequence, expressed in flower bud.
HX763450.1:292-314
ATTAGATATATATAATCCTTTCACGTAGAT292GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
Pyrus pyrifolia mRNA, clone: NLE1_06_04, 5' end sequence, expressed in leaf bud.
HX766203.1:262-284
ATTAGATATATATAATCCTTTCACGTAGAT262GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
TSA: Pyrus pyrifolia mRNA, contig: contig_1639.
FX432429.1:770-792
ATTAGATATATATAATCCTTTCACGTAGAT770GCCTGTTTCCACTTATGCTCACTCTCTTCTGTCAACCCTCAGCCTTGATCATG
Pyrus pyrifolia mRNA, clone: NFR1_32_41, 5' end sequence, expressed in fruit.
HX748366.1:41-63
CATGATCAAGGCTGAGGGTTGACAGAAGAG41AGTGAGCATAAGTGGAAACAGGCATCTACGTGAAAGGATTATATATATCTAAT
TSA: Pyrus x bretschneideri Unigene70617_XinShao mRNA sequence.
JR656984.1:62-84
CATGATCAAGGCTGAGGGTTGACAGAAGAG62AGTGAGCATAAGTGGAAACAGGCATCTACGTGAAAGGATTATATATATCTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCTGTTTCCACTTATGCTCACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCTGTTTCCACTTATGCTCACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.589 | 0.580 | search_plus_done; http://172.18.8.135:50400/match?q=GCCTGTTTCCACTTATGCTCACT&k=0&no_gap=0&offset=0&limit=50
0.702 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=AGTGAGCATAAGTGGAAACAGGC&k=0&no_gap=0&offset=0&limit=42
0.703 | 0.002 | cgi_end;

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