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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 04:11:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus chromosome 8, clone RP24-174F12, complete sequence.
AC109163.16:135406-135425
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA135406GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus cDNA sequence BC019943, mRNA (cDNA clone MGC:28346 IMAGE:4017819), complete cds.
BC019943.2:303-322
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA303GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971571.1:26707697-26707716
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26707697GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971582.1:26744163-26744182
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26744163GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971603.1:26986730-26986749
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26986730GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus domesticus genome assembly, chromosome: 8.
OW971629.1:27482374-27482393
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA27482374GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971645.1:26762152-26762171
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26762152GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus molossinus genome assembly, chromosome: 8.
OW971665.1:34368575-34368594
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA34368575GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971716.1:25957035-25957054
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA25957035GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971729.1:26722127-26722146
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26722127GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971750.1:27215120-27215139
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA27215120GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus musculus genome assembly, chromosome: 8.
OW971771.1:26642583-26642602
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26642583GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971792.1:26786018-26786037
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26786018GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971812.1:32674841-32674860
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA32674841GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OW971862.1:26900426-26900445
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA26900426GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OX389802.1:39920945-39920964
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA39920945GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OX390152.1:36329825-36329844
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA36329825GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus genome assembly, chromosome: 8.
OX439023.1:31412969-31412988
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA31412969GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele BC019943:tm1a(KOMP)Wtsi; transgenic.
JN960665.1:12971-12990
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA12971GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
ml39c06.r1 Stratagene mouse testis (#937308) Mus musculus cDNA clone IMAGE:514378 5', mRNA sequence.
AA061178.1:66-85
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA66GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
ml39c06.y1 Stratagene mouse testis (#937308) Mus musculus cDNA clone IMAGE:514378 5', mRNA sequence.
AI595144.1:67-86
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA67GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630003M24, 5' end partial sequence.
BB628419.1:619-638
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA619GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCA
601331551F2 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:3709045 5', mRNA sequence.
BE573110.1:347-366
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA347GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
601776112F1 NCI_CGAP_Lu29 Mus musculus cDNA clone IMAGE:4017819 5', mRNA sequence.
BF169128.1:302-321
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA302GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
603381815F1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:5387714 5', mRNA sequence.
BI854842.1:375-394
AGAAGGGCTCTACCCCCGGCCCTCGAACCA375GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
UI-M-FI0-byu-c-24-0-UI.r1 NIH_BMAP_FI0 Mus musculus cDNA clone IMAGE:5702351 5', mRNA sequence.
BQ771425.1:101-120
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA101GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0218F08-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0218F08 IMAGE:30012355 5', mRNA sequence.
CA535455.1:178-197
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA178GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0224G11-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0224G11 IMAGE:30012946 5', mRNA sequence.
CA535832.1:68-87
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA68GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0225B06-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0225B06 IMAGE:30012977 5', mRNA sequence.
CA535849.1:67-86
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA67GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
C0226D09-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0226D09 IMAGE:30013100 5', mRNA sequence.
CA535933.1:180-199
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA180GCCTTCTCCAAGATTCTGAACCGTGTCAGCCGCCCAAAG
C0239E01-5N NIA Mouse 7.5-dpc Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:C0239E01 IMAGE:30014352 5', mRNA sequence.
CA536848.1:211-230
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA211GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
UI-M-FY0-cfm-g-07-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone IMAGE:6851456 5', mRNA sequence.
CD347813.1:576-595
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA576GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
EST-77-2-3-D01.r.2 Preamplified custom cDNA library in pMAB58 (ResGen, Invitrogen Inc.) Emiliania huxleyi cDNA, mRNA sequence.
CF753806.1:137-156
TTCGAGAACTTCATCAACATGAACTACCTC137GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
UI-M-HJ0-cmv-m-22-0-UI.r1 NIH_BMAP_HJ0 Mus musculus cDNA clone IMAGE:30632661 5', mRNA sequence.
CF948878.1:572-591
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA572GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus mRNA 5-prime sequence from clone LA0AAA42YO15 (LA0AAA42YO15CM2).
FO749173.1:316-335
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA316GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
CAHN2659.fwd CAHN Emiliania huxleyi CCMP1516 day 4 post innoculation L Emiliania huxleyi cDNA clone CAHN2659 5', mRNA sequence.
GE141361.1:494-513
TTCGAGAACTTCATCAACATGAACTACCTC494GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAHP3184.fwd CAHP Emiliania huxleyi CCMP1516 day 14 post innoculation L Emiliania huxleyi cDNA clone CAHP3184 5', mRNA sequence.
GE159969.1:311-330
TTCGAGAACTTCATCAACATGAACTACCTC311GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAHS458.fwd CAHS Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAHS458 5', mRNA sequence.
GE173200.1:446-465
TTCGAGAACTTCATCAACATGAACTACCTC446GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAHS6797.fwd CAHS Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAHS6797 5', mRNA sequence.
GE176537.1:400-419
TTCGAGAACTTCATCAACATGAACTACCTC400GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAHS7608.fwd CAHS Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAHS7608 5', mRNA sequence.
GE177743.1:282-301
TTCGAGAACTTCATCAACATGAACTACCTC282GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAIA1874.fwd CAIA Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAIA1874 5', mRNA sequence.
GE184647.1:513-532
TTCGAGAACTTCATCAACATGAACTACCTC513GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAIA2386.fwd CAIA Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAIA2386 5', mRNA sequence.
GE185183.1:526-545
TTCGAGAACTTCATCAACATGAACTACCTC526GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAIA4341.fwd CAIA Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAIA4341 5', mRNA sequence.
GE187251.1:488-507
TTCGAGAACTTCATCAACATGAACTACCTC488GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAIA5309.fwd CAIA Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAIA5309 5', mRNA sequence.
GE188359.1:608-627
TTCGAGAACTTCATCAACATGAACTACCTC608GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAIA5606.fwd CAIA Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAIA5606 5', mRNA sequence.
GE188695.1:465-484
TTCGAGAACTTCATCAACATGAACTACCTC465GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAIA7178.fwd CAIA Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAIA7178 5', mRNA sequence.
GE190473.1:477-496
TTCGAGAACTTCATCAACATGAACTACCTC477GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
CAIA7269.fwd CAIA Emiliania huxleyi CCMP1516 day 7 post innoculation M Emiliania huxleyi cDNA clone CAIA7269 5', mRNA sequence.
GE190571.1:499-518
TTCGAGAACTTCATCAACATGAACTACCTC499GCCTTCTCCAAGATTCTGAAGAAGCACGACAAGTACTCCACCTGCCCCCT
Mus musculus HCM2122 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence.
AY405134.1:82-101
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA82GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAGAGTCATCAGGACA
Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230112G15 product:hypothetical ARM repeat structure containing protein, full insert sequence.
AK045392.1:621-640
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA621GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230336D21 product:hypothetical ARM repeat structure containing protein, full insert sequence.
AK046031.1:606-625
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA606GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230012M13 product:SIMILAR TO HYPOTHETICAL PROTEIN FLJ23263 homolog [Mus musculus], full insert sequence.
AK084242.1:606-625
GCAGAGGGCTCTCCCCCGGCCCTCGAACCA606GCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACA
Lumbricus terrestris genome assembly, chromosome: 9.
OX457044.1:30261042-30261061
ACCCGTTTTCGTTGGGTCGCCCAACTTTCC30261042GCCTTCTCCAAGATTCTGAATTCCCTCTAAGTCCGTCTTCTTAAAGGATT
Thysanoteuthis rhombus genome assembly, chromosome: 1.
OY735198.1:45692427-45692446
CTTAGAGGAATGGTGGAGTGATTCCCTGTT45692427GCCTTCTCCAAGATTCTGAATTCAGAGTTGTCCTTCTCGTTAACTGGCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCTTCTCCAAGATTCTGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCTTCTCCAAGATTCTGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.683 | 1.674 | search_plus_done; http://172.18.8.135:50400/match?q=GCCTTCTCCAAGATTCTGAA&k=0&no_gap=0&offset=0&limit=50
1.735 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=TTCAGAATCTTGGAGAAGGC&k=0&no_gap=0&offset=0&limit=0
1.735 | 0.000 | cgi_end;

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