GGGenome | Results

2025-04-05 19:30:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

GR-SE-001-GO-149-H11 Seedlings (EUGR-SE) Eucalyptus grandis cDNA clone GR-SE-001-GO-149-H11 5', mRNA sequence.
HS056070.1:168-195

GCAGCACTTAGAATATATATGATGCCCCAG168GCCTTCTCCTCCCATCTTTTTATTCATCCCCATTCTCCAGACTTCTCAGCCATCTTCA

UR-XY-001_BA-006_H09 Xylem vascular tissue, differentiating (EUUR-XY) Eucalyptus urophylla cDNA clone UR-XY-001_BA-006_H09 5', mRNA sequence.
JK681036.1:195-222

CAGCACTTAGAAATATATATGATGCCCCAG195GCCTTCTCCTCCCATCTTTTTATTCATCCCCATTCTCCAGACTTCTCAGCCATCTTCA

UR-XY-001_BA-026_F08 Xylem vascular tissue, differentiating (EUUR-XY) Eucalyptus urophylla cDNA clone UR-XY-001_BA-026_F08 5', mRNA sequence.
JK682329.1:194-221

CAGCACTTAGAAATATATATGATGCCCCAG194GCCTTCTCCTCCCATCTTTTTATTCATCCCCATTCTCCAGACTTCTCAGCCATCTTCA

EG_Ba072P05.R EG_Ba Eucalyptus grandis genomic 3', genomic survey sequence.
JM739672.1:468-495

GCATCACTTATAATATATATGAAGTCCCAG468GCCTTCTCCTCCCATCTTTTTATTCATCCCCATTCTCCAGACTTCTCATCCAATCTTC

Sequence 7771 from patent US 10760088.
MV637510.1:1731-1758

TGAAGATGGCTGAGAAGTCTGGAGAATGGG1731GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

Sequence 7771 from patent US 11111499.
MY429393.1:1731-1758

TGAAGATGGCTGAGAAGTCTGGAGAATGGG1731GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT982516.1:108-135

TGAAGATGGCTGAGAAGTCTGGAGAATGGG108GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT983281.1:83-110

TGAAGATGGCTGAGAAGTCTGGAGAATGGG83GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT985159.1:83-110

TGAAGATGGCTGAGAAGTCTGGAGAATGGG83GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT986735.1:108-135

TGAAGATGGCTGAGAAGTCTGGAGAATGGG108GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT987160.1:83-110

TGAAGATGGCTGAGAAGTCTGGAGAATGGG83GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii.
CT987460.1:83-110

TGAAGATGGCTGAGAAGTCTGGAGAATGGG83GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

Eucalyptus camaldulensis mRNA, clone: Leaf_004_000046A11, 3'-EST.
FY799178.1:235-262

TGAAGATGGCTGAGAGGTCTGGAGAATGGG235GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

Eucalyptus camaldulensis mRNA, clone: Stem_001_000229E01, 3'-EST.
FY829336.1:30-57

GAAGATGGCTGAGAGGTCTGGAGAATGGG30GATGAATAAAAAGATGGGAGGAGAAGGCTGGGGCATCATATATATTCTAAGTGCTGCA

Eucalyptus camaldulensis mRNA, clone: Stem_001_000242G02, 3'-EST.
FY830481.1:321-348

TGAAGATGGCTGAGAGGTCTGGAGAATGGG321GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

Eucalyptus camaldulensis mRNA, clone: Stem_001_000287E10, 3'-EST.
FY833353.1:61-88

TGAAGATGGCTGAGAGGTCTGGAGAATGGG61GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

Eucalyptus camaldulensis mRNA, clone: Stem_001_000304A12, 3'-EST.
FY834580.1:59-86

TGAAGATGGCTGAGAGGTCTGGAGAATGGG59GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

Eucalyptus camaldulensis mRNA, clone: Stem_005_000050H11, 3'-EST.
FY840614.1:90-117

TGAAGATGGCTGAGAAGTCTGGAGAATGGG90GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

GR-TS-001-AF-005-B05 Treated seedlings (EUGR-TS) Eucalyptus grandis cDNA clone GR-TS-001-AF-005-B05 5', mRNA sequence.
HS058698.1:293-320

TGAAGATGGCTGAGAAGTCTGGAGAATGGG293GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

GR-TS-001-GO-065-F03 Treated seedlings (EUGR-TS) Eucalyptus grandis cDNA clone GR-TS-001-GO-065-F03 5', mRNA sequence.
HS063141.1:310-337

TGAAGATGGCTGAGAAGTCTGGAGAATGGG310GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTTCTAAGTGCTG

GR-XY-006-RS-071-D09.R Xylem (EUGR-XY) Eucalyptus grandis cDNA clone GR-XY-006-RS-071-D09.R 5', mRNA sequence.
HS073146.1:140-167

TGAAGATGGCTGAGAAGTCTGGAGAATGGG140GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

GL-XY-001_AF-036_A12 Xylem vascular tissue, differentiating (EUGL-XY) Eucalyptus globulus cDNA clone GL-XY-001_AF-036_A12 5', mRNA sequence.
JK636615.1:129-156

TGAAGATGGCTGAGAAGTCTGGAGAATGGG129GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

GL-XY-001_AF-062_A03 Xylem vascular tissue, differentiating (EUGL-XY) Eucalyptus globulus cDNA clone GL-XY-001_AF-062_A03 5', mRNA sequence.
JK638116.1:3-30

GG3GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTCC

GL-XY-001_CN-062_B09 Xylem vascular tissue, differentiating (EUGL-XY) Eucalyptus globulus cDNA clone GL-XY-001_CN-062_B09 5', mRNA sequence.
JK643232.1:231-258

TGAAGATGGCTGAGAAGTCTGGAGAATGGG231GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTTCTAAGTGCTG

GL-XY-002_CN-018_G02 Xylem vascular tissue, differentiating (EUGL-XY) Eucalyptus globulus cDNA clone GL-XY-002_CN-018_G02 5', mRNA sequence.
JK647353.1:192-219

TGAAGATGGCTGAGAAGTCTGGAGAATGGG192GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTTCTAAGTGCTG

PE-XY-001_MG-027_F06 Xylem vascular tissue, differentiating (EUPE-XY) Eucalyptus pellita cDNA clone PE-XY-001_MG-027_F06 5', mRNA sequence.
JK673942.1:227-254

TGAAGATGGCTGAGAAGTCTGGAGAATGGG227GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

PE-XY-003_CN-006_A08 Xylem vascular tissue, differentiating (EUPE-XY) Eucalyptus pellita cDNA clone PE-XY-003_CN-006_A08 5', mRNA sequence.
JK679539.1:380-407

TGAAGATGGCTGAGAAGTCTGGAGAATGGG380GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTCTAAGTGCTGC

UR-XY-001_BA-007_D12 Xylem vascular tissue, differentiating (EUUR-XY) Eucalyptus urophylla cDNA clone UR-XY-001_BA-007_D12 5', mRNA sequence.
JK681075.1:99-126

TGAAGATGGCTGAGAAGTCTGGAGAATGGG99GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTTCTAAGTGCTG

UR-XY-001_BA-074_G02 Xylem vascular tissue, differentiating (EUUR-XY) Eucalyptus urophylla cDNA clone UR-XY-001_BA-074_G02 5', mRNA sequence.
JK685367.1:155-182

TGAAGATGGCTGAGAAGTCTGGAGAATGGG155GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTTCTAAGTGCTG

UR-XY-001_BA-089_E01 Xylem vascular tissue, differentiating (EUUR-XY) Eucalyptus urophylla cDNA clone UR-XY-001_BA-089_E01 5', mRNA sequence.
JK686422.1:45-72

TGAAGATGGCTGAGAAGTCTGGAGAATGGG45GATGAATAAAAAGATGGGAGGAGAAGGCCTGGGGCATCATATATATTTCTAAGTGCTG

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
0.410 | 0.402 | search_plus_done; http://172.18.8.135:50400/match?q=GCCTTCTCCTCCCATCTTTTTATTCATC&k=0&no_gap=0&offset=0&limit=50
2.148 | 1.737 | search_minus_done; http://172.18.8.135:50400/match?q=GATGAATAAAAAGATGGGAGGAGAAGGC&k=0&no_gap=0&offset=0&limit=46
2.164 | 0.017 | cgi_end;

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