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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 17:24:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS01_03dg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03dg10, mRNA sequence.
CB292094.1:557-576
CCATCTTGAATGGCAAATGCTAGTGATGAA557GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCA
UCRCS01_06dh04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dh04, mRNA sequence.
CB293953.1:527-546
CCATCTTGAATGGCAAATGCTAGTGATGAA527GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCR01_05N22_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N22, mRNA sequence.
CF831149.1:460-479
CCATCTTGAATGGCAAATGCTAGTGATGAA460GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS03_02C06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C06, mRNA sequence.
CF835927.1:544-563
CCATCTTGAATGGCAAATGCTAGTGATGAA544GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS04_0005D13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005D13, mRNA sequence.
CN184249.1:462-481
CCATCTTGAATGGCAAATGCTAGTGATGAA462GCCTTGTGGTAGCTTTCGAGCTGTGTGCAAACCGTCT
UCRCS05_0004K23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K23, mRNA sequence.
CN187578.1:550-569
CCATCTTGAATGGCAAATGCTAGTGATGAA550GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS05_0006M02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M02, mRNA sequence.
CN188774.1:593-612
CCATCTTGAATGGCAAATGCTAGTGATGAA593GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCC
UCRCS05_0006P20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P20, mRNA sequence.
CN188894.1:551-570
CCATCTTGAATGGCAAATGCTAGTGATGAA551GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS06_0006N18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006N18, mRNA sequence.
CN192417.1:553-572
CCATCTTGAATGGCAAATGCTAGTGATGAA553GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCA
UCRCS08_0011D11_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0011D11, mRNA sequence.
CV718928.1:574-593
CCATCTTGAATGGCAAATGCTAGTGATGAA574GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS08_0011L11_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0011L11, mRNA sequence.
CV719270.1:557-576
CCATCTTGAATGGCAAATGCTAGTGATGAA557GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS08_0011N09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0011N09, mRNA sequence.
CV719357.1:554-573
CCATCTTGAATGGCAAATGCTAGTGATGAA554GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS09_18E05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-18E05-J9-1-5.b, mRNA sequence.
CX048059.1:460-479
CCATCTTGAATGGCAAATGCTAGTGATGAA460GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS09_41F01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-41F01-K2-1-6.g, mRNA sequence.
CX051710.1:546-565
CCATCTTGAATGGCAAATGCTAGTGATGAA546GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS09_46B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-46B09-D17-1-6.g, mRNA sequence.
CX052465.1:487-506
CCATCTTGAATGGCAAATGCTAGTGATGAA487GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCS08_19A02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-19A02-B3-1-4.b, mRNA sequence.
CX070792.1:555-574
CCATCTTGAATGGCAAATGCTAGTGATGAA555GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCA
UCRCS08_26F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-26F02-K4-1-5.b, mRNA sequence.
CX072192.1:489-508
CCATCTTGAATGGCAAATGCTAGTGATGAA489GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
UCRCP01_037_H04_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_037_T7_H04, mRNA sequence.
CX668473.1:549-568
CCATCTTGAATGGCAAATGCTAGTGATGAA549GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCA
UCRCP01_040_D01_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_040_T7_D01, mRNA sequence.
CX668890.1:549-568
CCATCTTGAATGGCAAATGCTAGTGATGAA549GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCA
Citrus sinensis mRNA, clone: EIC0913, 5'-end sequence, expressed in embryonic induction callus.
DC887805.1:521-540
CCATCTTGAATGGCAAATGCTAGTGATGAA521GCCTTGTGGTAGCTTTCGAGCT
Citrus unshiu mRNA, clone: PCC0778, 5'-end sequence, expressed in callus.
DC896189.1:581-600
CCATCTTGAATGGCAAATGCTAGTGATGAA581GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGCCA
Citrus unshiu mRNA, clone: RGP0265, 5'-end sequence, expressed in root.
DC896487.1:530-549
CCATCTTGAATGGCAAATGCTAGTGATGAA530GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCTTCTGGGCTGTGAG
UCRCS11_02C17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C17, mRNA sequence.
DN618142.1:548-567
CCATCTTGAATGGCAAATGCTAGTGATGAA548GCCTTGTGGTAGCTTTCGAGCTGTGTGCCA
UCRCA01_02H15_f Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0002H15, mRNA sequence.
DN622702.1:556-575
CCATCTTGAATGGCAAATGCTAGTGATGAA556GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACTGTCTGGGCCGTGAGC
UCRCA01_04F21_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0004F21, mRNA sequence.
DN624004.1:537-556
CCATCTTGAATGGCAAATGCTAGTGATGAA537GCCTTGTGGTAGCTTTCGAGCTGTGT
C21 'BH' (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5', mRNA sequence.
GE213158.1:229-248
CCATCTTGAATGGCAAATGCTAGTGATGAA229GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCA
Citrus sinensis genome assembly, chromosome: 6.
OY754323.1:7755739-7755758
CTTACTTGAATGGCAAATGCTAGTGATGAA7755739GCCTTGTGGTAGCTTTCGAGCTGTGTGCCAACCGTCTGGGCCGTGAGCCA
Aeromonas dhakensis VA54 DNA, complete genome.
AP027936.1:3679157-3679176
GTGGCTGGGCGGGTTGCCTTGGCTCGGTAG3679157GCCTTGTGGTAGCTTTCGAGCTGCAACAACATGTAGATCAGATTGCGAGT
Aeromonas dhakensis VA84 DNA, complete genome.
AP027942.1:3680985-3681004
GTGGCTGGGCGGGTTGCCTTGGCTCGGTAG3680985GCCTTGTGGTAGCTTTCGAGCTGCAACAACATGTAGATCAGATTGCGAGT
Aeromonas dhakensis RYU-Ah62 DNA, complete genome.
AP028321.1:3647070-3647089
GTGGCTGGGCGGGTTGCCTTGGCTCGGTAG3647070GCCTTGTGGTAGCTTTCGAGCTGCAACAACATGTAGATCAGATTGCGAGT
Aeromonas dhakensis strain BOND 19077 chromosome, complete genome.
CP121801.1:4568386-4568405
GTGGCTGGGCGGGTTGCCTTGGCTCGGTAG4568386GCCTTGTGGTAGCTTTCGAGCTGCAACAACATGTAGATCAGATTGCGAGT
UCRCS01_04dg09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04dg09, mRNA sequence.
CB292716.1:249-268
TGGCTCACGGCCCAGACGGTTGGCACACAG249CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS01_06dh04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dh04, mRNA sequence.
CB293954.1:248-267
TGGCTCACGGCCCAGACAGTTGGCACACAG248CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS01_06dh09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dh09, mRNA sequence.
CB293962.1:235-254
TGGCTCACGGCCCAGACAGTTGGCACACAG235CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
USDA-FP_119000-361 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G06 5', mRNA sequence.
CF503874.1:280-299
TGGCTCACGGCCCAGACAGTTGGCACACAG280CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
USDA-FP_121000-326 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-36_G08 5', mRNA sequence.
CF505831.1:200-219
TGGCTCACGGCCCAGACGGTTGGCACACAG200CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
USDA-FP_122000-825 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-56_C08 5', mRNA sequence.
CF507324.1:285-304
TGGCTCACGGCCCAGACGGGTGGCACACAG285CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
USDA-FP_124000-435 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-72_E03 5', mRNA sequence.
CF508932.1:285-304
TGGCTCACGGCCCAGACGGTTGGCACACAG285CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCR01_05N22_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N22, mRNA sequence.
CF831150.1:282-301
TGGCTCACGGCCCAGACAGTTGGCACACAG282CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS03_02C06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C06, mRNA sequence.
CF835928.1:285-304
TGGCTCACGGCCCAGACAGTTGGCACACAG285CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
CGF1004553_B02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_B02 5', mRNA sequence.
CK935665.1:281-300
TGGCTCACGGCCCAGACAGTTGGCACACAG281CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS04_0001A06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A06, mRNA sequence.
CN181482.1:265-284
TGGCTCACGGCCCAGACAGTTGGCACACAG265CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS04_0005D13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005D13, mRNA sequence.
CN184250.1:121-140
TGGCTCACGGCCCAGACGGTTGGCACACAG121CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS05_0003O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O17, mRNA sequence.
CN187088.1:281-300
TGGCTCACGGCCCAGACGGTTGGCACACAG281CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS05_0006M02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M02, mRNA sequence.
CN188775.1:253-272
TGGCTCACGGCCCAGACGGTTGGCACACAG253CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS05_0006P20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P20, mRNA sequence.
CN188895.1:250-269
TGGCTCACGGCCCAGACAGTTGGCACACAG250CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS06_0002E15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E15, mRNA sequence.
CN189701.1:256-275
TGGCTCACGGCCCAGACAGTTGGCACACAG256CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS06_0006N18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006N18, mRNA sequence.
CN192418.1:285-304
TGGCTCACGGCCCAGACGGTTGGCACACAG285CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS08_0005L14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0005L14, mRNA sequence.
CV715416.1:276-295
TGGCTCACGGCCCAGACAGTTGGCACACAG276CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG
UCRCS08_0007P17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0007P17, mRNA sequence.
CV716857.1:269-288
TGGCTCACGGCCCAGACGGTTGGCACACAG269CTCGAAAGCTACCACAAGGCTTCATCACTAGCATTTGCCATTCAAGATGG

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