GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:05:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 11410 from patent US 7834146.
GX743231.1:669-691
GGCCGCGCGCTCGCCGTGCGGAGCGGACGC669GCGAACAAGTTCGACGGCAAGATGTCCGCGTTCCCCGGCCAGGCGGGGGACGG
Sequence 11410 from patent US 8106174.
GZ086102.1:669-691
GGCCGCGCGCTCGCCGTGCGGAGCGGACGC669GCGAACAAGTTCGACGGCAAGATGTCCGCGTTCCCCGGCCAGGCGGGGGACGG
Sequence 4995 from patent US 8299318.
GZ558729.1:1351-1373
GGCCGCGCGCTCGCCGTGCGGAGCGGCCGC1351GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCAGGCCAGGCCGGGGATGG
Sequence 9961 from Patent WO2003008540.
HA108330.1:420-442
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG420GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Sequence 878 from patent US 10113176.
MM129773.1:1517-1539
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG1517GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Sequence 879 from patent US 10113176.
MM129774.1:1210-1232
GGCAGGGCGCTCGCCGTGCGGAGCGGCCGG1210GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCCGGGGACGG
Sequence 4995 from patent US 10150971.
MM440770.1:1351-1373
GGCCGCGCGCTCGCCGTGCGGAGCGGCCGC1351GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCAGGCCAGGCCGGGGATGG
Sequence 4995 from patent US 10947553.
MX448450.1:1351-1373
GGCCGCGCGCTCGCCGTGCGGAGCGGCCGC1351GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCAGGCCAGGCCGGGGATGG
Sequence 5537 from patent US 10975383.
MX544947.1:1962-1984
GGCCGCGCGCTCGCCGTGCGGAGCGGACGC1962GCGAACAAGTTCGACGGCAAGATGTCCGCGTTCCCCGGCCAGGCGGGGGACGG
Sequence 5540 from patent US 10975383.
MX544950.1:1545-1567
GGCCGCGCGCTCGCCGTGCGGAGCGGCCGC1545GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCAGGCCAGGCCGGGGATGG
Sequence 4995 from patent US 11001852.
MX712437.1:1351-1373
GGCCGCGCGCTCGCCGTGCGGAGCGGCCGC1351GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCAGGCCAGGCCGGGGATGG
Sequence 878 from patent US 11078492.
MY223427.1:1517-1539
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG1517GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Sequence 879 from patent US 11078492.
MY223428.1:1210-1232
GGCAGGGCGCTCGCCGTGCGGAGCGGCCGG1210GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCCGGGGACGG
DG1_82_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence.
BE361866.1:479-501
GGCCGCGCGCTCGCCGTGCGGAGCGGACGC479GCGAACAAGTTCGACGGCAAGATGTCCGCGTTCCCCGGCCAGGCGGGGGACGG
PI1_92_G11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence.
BE601430.1:140-162
GGCCGCGCGCTCTCCGTGCGGAGCGGACGC140GCGAACAAGTTCGACGGCAAGATGTCCGCGTTCCCCGGCCAGGCGGGGGACGG
ABA1_17_A07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_17_A07_A012 3', mRNA sequence.
CB928646.1:174-196
GGCCGCGCGCTCGCCGTGCGGAGCGGACGC174GCGAACAAGTTCGACGGCAAGATGTCCGCGTTCCCCGGCCAGGCGGGGGACGG
FGAS000580 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum cDNA, mRNA sequence.
DR740639.1:390-412
GGCAGGGCGCTCGCGGTGCGGAGCGGGCGG390GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGGCAGGCCGGGGACGG
PT0131d.C10.BR PT013 Puccinia triticina cDNA clone PT0131d.C10.BR 5'-end, mRNA sequence.
EC415020.1:155-177
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG155GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
BG02016A1B05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02016A1B05.f1, mRNA sequence.
FF352232.1:530-552
GGCAGGGCGCTCGCCGTGCGGAGCGGCCGG530GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCCGGGGACGG
010304KADA029793HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clone KADAA02979, mRNA sequence.
FG438114.1:580-602
GGGCGACCGTTGGCGGTGAGGAGCGGCAGG580GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTTGCTGCCGCGACGGCGGCGG
010303KADA027180HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clone KADAA02718, mRNA sequence.
FG439314.1:150-172
GGGCGACCGTTGGCGGTGAGGAGCGGCAGG150GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTTGCTGCCGCGACGGCGGCGG
021008KALA009751HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatment Actinidia deliciosa cDNA clone KALAA00975, mRNA sequence.
FG470714.1:252-274
GGGCGACCGTTGGCGGTGAGGAGCGGCAGG252GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTTGCGGCCGCGACGGCGGCGG
020919KALA009829HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatment Actinidia deliciosa cDNA clone KALAA00982, mRNA sequence.
FG478427.1:222-244
GGGCGACCGTTGGCGGTGAGGAGCGGCAGG222GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTTGCGGCCGCGACGGCTGCGG
011122KAJA001322HT (KAJA) Actinidia eriantha ripe fruit skin Actinidia eriantha cDNA clone KAJAA00132, mRNA sequence.
FG479934.1:559-581
GGGCTACCGGTGGCGGTGAGAAGTGGCAGG559GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTCCCGGCCGCGACGGCGGCGG
021106KAUB001693HT (KAUB) Actinidia chinensis CK51-05 petal Actinidia chinensis cDNA clone KAUBB00169, mRNA sequence.
FG486582.1:359-381
GGGCGACCGTTGGCGGTGAGGAGCGGCAGG359GCGAACAAGTTCGACGGCAAGATCTCGGCGTTT
030522KASB001635HT (KASB) Subtractive library using two extreme individuals from Kiwifruit Mapping population Actinidia chinensis cDNA clone KASBB00163, mRNA sequence.
FG525089.1:174-196
GGGCGACCGTTGGCGGTGAGGAGCGGCAGG174GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTTGCGGCCGCGACGGCGGCGG
030130KUFA007468CT (KUFA) Actinidia eriantha young fruit Actinidia eriantha cDNA clone KUFAA00746, mRNA sequence.
HO772636.1:1298-1320
GGGCTACCGGTGGCGGTGAGAAGTGGCAGG1298GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTCCCGGCCGCGACGGCGGCGG
Elaeis guineensis EST, clone (6lib)_isotig07326.
LM617345.1:1397-1419
GGGCAGCCCCTGGCGTTGCGGAGTGGGCGG1397GCGAACAAGTTCGACGGCAAGATTTCGGCGTTCCCAGGGAGGGAGGGAGGAGG
Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ADA8YO18 (ADL0ADA8YO18CM1).
LO011759.1:432-454
GGGAAGCCGCTGGCAATTCGGAGCGGCAAG432GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTCCCGGGAAGGAAGGAAACGG
TSA: Cajanus cajan cultivar UPAS 120 contig16729.UPAS mRNA sequence.
EZ634446.1:147-169
GGGAGGCCGGTGGCGATTCGGAGCGGAAAG147GCGAACAAGTTCGACGGCAAGATCTCTGCGTTTCCCGCGAGAGAGGGAAACGG
TSA: Ficus carica mRNA, contig: FICAF07382.
FX384356.1:1100-1122
GNNAANCCGGTGGCGGTGAGGAGCGGCAGG1100GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTCCNNNNA
TSA: Torenia fournieri mRNA, contig: TfPT004319.000.
FX511415.1:1332-1354
GGCCGACCGCTGGCCGTGAGGAGCGGCGGT1332GCGAACAAGTTCGACGGCAAGATCTCGGCTTTTCAGGGTTGTGAAGGGGACGG
TSA: Triticum aestivum Ta_Contig9674.ansp mRNA sequence.
JV872629.1:1312-1334
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG1312GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
TSA: Triticum aestivum Ta_Contig108491.ansp mRNA sequence.
JV901350.1:78-100
GGCAGGGCGCTCGCGGTGCGGAGCGGGCGG78GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCCGGGGACGG
HDE008L22.F HDE Setaria viridis genomic 5', genomic survey sequence.
KS189708.1:181-203
GGCCGCGCCCTCGCTGTGCGGAGCGGCCGC181GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCTGGGGATGG
Triticum aestivum mRNA, clone: tplb0044o20, cultivar Chinese Spring.
AK451169.1:1369-1391
GGCAGGGCGCTCGCCGTGCGGAGCGGGCGG1369GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCCGGGGACGG
Setaria viridis cultivar ME034v chromosome 3.
CP050797.1:17481704-17481726
GGCCGCGCCCTCGCTGTGCGGAGCGGCCGC17481704GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCTGGGGATGG
Antiaris toxicaria isolate JCLG002 chromosome 11.
CP141163.1:8004980-8005002
GGGAAGCCGGCGGCGGTGAGGAGCGGAAGG8004980GCGAACAAGTTCGACGGCAAGATCTCGGCGTTTCCGGGGAGGGAAGGGAACGG
Antiaris toxicaria isolate JCLG002 chromosome 11.
CP141176.1:7995865-7995887
GGGAAGCCGGCGGCGGTGAGGAGCGGAAGG7995865GCGAACAAGTTCGACGGCAAGATCTCAGCGTTTCCGGGGAGGGAAGGGAACGG
Elaeis guineensis putative hydroxycinnamoyl transferase (HCT) mRNA, partial cds.
KC146061.1:997-1019
GGGCAGCCCCTGGCGTTGCGGAGTGGGCGG997GCGAACAAGTTCGACGGCAAGATTTCGGCGTTCCCAGGGAGGGAGGGAGGAGG
Triticum aestivum genome assembly, chromosome: 1B.
LR862551.1:511581532-511581554
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG511581532GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Triticum aestivum genome assembly, chromosome: 1D.
LR865762.1:366198721-366198743
GGCAGGGCGCTCGCCGTGCGGAGCGGGCGG366198721GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCCGGGGACGG
Digitaria exilis genome assembly, chromosome: 3A.
LR994608.1:17871805-17871827
GGCCGCGCGCTCGCCGTGCGGAGCGGCCGG17871805GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCTGGGGATGG
Digitaria exilis genome assembly, chromosome: 3B.
LR994609.1:17720639-17720661
GGCCGCGCGCTCGCCGTGCGGAGCGGCCGG17720639GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCTGGGGATGG
Triticum aestivum genome assembly, chromosome: 1B.
LS992081.1:500540733-500540755
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG500540733GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Triticum aestivum genome assembly, chromosome: 1B.
OU963873.1:519493130-519493152
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG519493130GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Triticum aestivum genome assembly, chromosome: 1B.
OV100738.1:513819886-513819908
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG513819886GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Triticum aestivum genome assembly, chromosome: 1B.
OW530311.1:513819886-513819908
GGCAGAGCGCTCGCCGTGCGGAGCGGCCGG513819886GCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCAGGCGGGGGACGG
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 1B.
OX082597.1:347619053-347619075
GGCAGGGCGCTCGCCGTGCGGAGCGGGCGT347619053GCGAACAAGTTCGACGGCAAGATGTCGGCGTTTCCGGGCCAGGCCGGGGACGG
Sherardia arvensis genome assembly, chromosome: 2.
OX415236.1:1652457-1652479
GGGAGACCCATGGCGGTGAGGAGCGGCCGG1652457GCGAACAAGTTCGACGGCAAGATTTCGGCGTTTCCAGGAAGGGAAGGCGGCGG
Sherardia arvensis genome assembly, chromosome: 2.
OX415236.1:1659350-1659372
GGGAGACCCATGGCGGTGAGGAGCGGCCGG1659350GCGAACAAGTTCGACGGCAAGATTTCGGCGTTTCCAGGAAGGGAAGGCGGCGG
Geranium rotundifolium genome assembly, chromosome: 7.
OY987317.1:35330046-35330068
GGGCGGCCGGTGGCGGTGAGGAGCGGGAGG35330046GCGAACAAGTTCGACGGCAAGATATCGGCGTTTCCGGGGAGGGAGGGAGGCGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGAACAAGTTCGACGGCAAGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGAACAAGTTCGACGGCAAGAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.638 | 1.630 | search_plus_done; http://172.18.8.135:50400/match?q=GCGAACAAGTTCGACGGCAAGAT&k=0&no_gap=0&offset=0&limit=50
1.934 | 0.295 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTTGCCGTCGAACTTGTTCGC&k=0&no_gap=0&offset=0&limit=0
1.934 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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