GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 05:15:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bos taurus genome assembly, chromosome: 1.
LR962739.1:115343008-115343029
TATGGGGGCTTGAGATAATAATTCTGTCTT115343008GCGAGAAGAAGAGAGGAAAGAAAAAAAAAAATCAAGAGTTGCCCAAGGGAGA
Bos taurus genome assembly, chromosome: 1.
LR962864.1:113084811-113084832
TATGGGGGCTTGAGATAATAATTCTGTCTT113084811GCGAGAAGAAGAGAGGAAAGAAAAAAAAAAAATCAAGAGTTGCCCAAGGGAG
Bos gaurus x Bos taurus genome assembly, chromosome: 1.
OX258955.1:113713305-113713326
TATGGGGGCTTGAGATAATAATTCTGTCTT113713305GCGAGAAGAAGAGAGGAAAGAAAAAAAAAAAATCAAGAGTTGCCCAAGGGAG
Bos taurus strain mammals genome assembly, chromosome: 1.
OX344690.1:114970655-114970676
TATGGGGGCTTGAGATAATAATTCTGTCTT114970655GCGAGAAGAAGAGAGGAAAGAAAAAAAAAAAATCAAGAGTTGCCCAAGGGAG
Bos taurus genome assembly, chromosome: Bta01.
OY997229.1:118217565-118217586
TATGGGGGCTTGAGATAATAATTCTGTCTT118217565GCGAGAAGAAGAGAGGAAAGAAAAAAAAAAAATCAAGAGTTGCCCAAGGGAG
Brassica oleracea var. viridis mRNA, clone: KALE-065K02, 5' end sequence.
DK480634.1:323-344
GAATAAAAATTCATAATAAAAAAAGTTAAA323GCGAGAAGAAGAGAGGAAAGAAGAGAAGAAGGCTCATCATCATCAATCATCA
74ETGS48_UP_010_A08_27APR2005_064 74ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE447079.1:64-85
GAAATTCATAATAAAAAAAAAAAAGTTAAA64GCGAGAAGAAGAGAGGAAAGAAGAGAAGGCTCATCATCATCATCATCATCAT
EST1594 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B067F091, mRNA sequence.
EL624088.1:6-27
GGAAA6GCGAGAAGAAGAGAGGAAAGAAGAGAAGAAGGCTCATCATCATCAATCATCA
BNARO1GH_T3_006_C09_22NOV2006_075 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES900031.1:27-48
AATTCATAATAAAAAAAAAAGTTAAA27GCGAGAAGAAGAGAGGAAAGAAGAGAAGGCTCATCATCATCATCATCATCAT
BNARO4GH_T3_002_G01_24NOV2006_003 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES903858.1:30-51
AGAAATTCATAATAAAAAAAAAAGTTAAA30GCGAGAAGAAGAGAGGAAAGAAGAGAAGGCTCATCATCATCATCATCATCAT
36RDBRG_UP_083_F08_19JAN2006_054 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES929776.1:52-73
TAGAAATTCATAATAAAAAAAAAAGTTAAA52GCGAGAAGAAGAGAGGAAAGAAGAGAAGGCTCATCATCATCATCATCATCAT
BR006135 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-058A11 5', mRNA sequence.
EX021491.1:27-48
GCGGGATCGGCCGAGGAAAAGTTAAA27GCGAGAAGAAGAGAGGAAAGAAGAGAAGGCTCATCATCATCACCATACCCAC
BN18DYSC_UP_136_B06_3APR2008_046 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG564403.1:21-42
GGATAATAAAAAAAGTTAAA21GCGAGAAGAAGAGAGGAAAGAAGAGAAGAAGGCTCATCATCATCAATCATCA
BN18DYSC_UP_178_A07_4APR2008_063 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG568107.1:32-53
TAGAAATTCATAATAAAAAAAAAAGTTAAA32GCGAGAAGAAGAGAGGAAAGAAGAGAAGGCTCATCATCATCATCATCATCAT
PlB_1_I19.g EST library of the total animal Pleurobrachia bachei Pleurobrachia bachei cDNA, mRNA sequence.
FK670038.1:193-214
GGCCGAACGGGAACGAGAGTTGAAAAGAAG193GCGAGAAGAAGAGAGGAAAGAAGAGAAACGAGAACGTATCAAAAAAAAAAAA
BOHAL94TR BOHA Brassica oleracea genomic clone BOHAL94, genomic survey sequence.
BH458695.1:428-449
AAATAAAAATTCATAATAAAAAAAGTTAAA428GCGAGAAGAAGAGAGGAAAGAAGAGAAGAAGGCTCATCATCATCATCATCAT
Bos taurus clone CH240-135E17, WORKING DRAFT SEQUENCE, 22 unordered pieces.
AC164133.2:154784-154805
TATGGGGGCTTGAGATAATAATTCTGTCTT154784GCGAGAAGAAGAGAGGAAAGAAAAAAAAAAAATCAAGAGTTGCCCAAGGGAG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:43053705-43053726
AAATAAAAATTCATAATAAAAAAAGTTAAA43053705GCGAGAAGAAGAGAGGAAAGAAGAGAAGAAGGCTCATCATCATCAATCATCA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:45912960-45912981
AAATAAAAATTCATAATAAAAAAAGTTAAA45912960GCGAGAAGAAGAGAGGAAAGAAGAGAAGAAGGCTCATCATCATCATCATCAT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6423.
FX699193.1:1574-1595
GTGGGTTTGATGATGATGATGAGCCTTCTC1574TTCTTTCCTCTCTTCTTCTCGCTTTAACTTTTTTTTTTATTATGAATTTCTA
BOHWQ32TF BO_2_3_KB Brassica oleracea genomic clone BOHWQ32, genomic survey sequence.
BH681007.1:306-327
ATGATGATGATGATGATGAGCCTTCTTCTC306TTCTTTCCTCTCTTCTTCTCGCTTTAACTTTTTTTATTATGAATTTTTATTT
KBrH077H05R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH077H05, genomic survey sequence.
DU986011.1:299-320
GTGGGTTTGATGATGATGATGAGCCTTCTC299TTCTTTCCTCTCTTCTTCTCGCTTTAACTTTTTTTTTTATTATGAATTTCTA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:12768904-12768925
TGATGATTGATGATGATGAGCCTTCTTCTC12768904TTCTTTCCTCTCTTCTTCTCGCTTTAACTTTTTTTATTATGAATTTTTATTT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:38686023-38686044
ATGATGATGATGATGATGATGAGCCTTCTC38686023TTCTTTCCTCTCTTCTTCTCGCTTTAACTTTTTTTTTTATTATGAATTTCTA
Brassica rapa genome, scaffold: A06.
LR031569.1:48745135-48745156
ATGATGATGATGATGATGATGAGCCTTCTC48745135TTCTTTCCTCTCTTCTTCTCGCTTTAACTTTTTTTTTTATTATGAATTTCTA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:52361581-52361602
ATGATGATGATGATGATGATGAGCCTTCTC52361581TTCTTTCCTCTCTTCTTCTCGCTTTAACTTTTTTTTTTATTATGAATTTCTA
Arctium minus genome assembly, chromosome: 4.
OX941083.1:143578951-143578972
TTCCTTCTCGTCTTCTCTCTCTTCTTCCTC143578951TTCTTTCCTCTCTTCTTCTCGCCAAGAACCCTCGACGAACGTCGTTTCGTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCGAGAAGAAGAGAGGAAAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGAGAAGAAGAGAGGAAAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.064 | 1.055 | search_plus_done; http://172.18.8.135:50400/match?q=GCGAGAAGAAGAGAGGAAAGAA&k=0&no_gap=0&offset=0&limit=50
1.236 | 0.172 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTTCCTCTCTTCTTCTCGC&k=0&no_gap=0&offset=0&limit=31
1.241 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).