GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 17:02:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

STRS1_2_C06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_2_C06_A034 3', mRNA sequence.
DR015201.1:137-156
AAGTGCCGCAGCAATTGCCCCAACATCGTC137AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
STRS1_4_C05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_4_C05_A034 5', mRNA sequence.
DR015609.1:426-445
AAGTGCCGCGGCAGTTGCCCCAACATCGTC426AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
Pinus thunbergii mRNA, clone: Pt_SSH_3dpi_S_205R, unspecified EST.
FY842601.1:163-182
AAGTGCCGCAGCAATTGCCCCAACATCGTC163AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
Pinus thunbergii mRNA, clone: Pt_SSH_14dpi_R_027R, unspecified EST.
FY843972.1:49-68
AAGTGCCGCAGCAATTGCCCCAACATCGTC49AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
PCO021.C21_F14 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO021_F14 5', mRNA sequence.
GT257921.1:560-579
AAGTGCCGCGGCAGTTGCCCCAACATCGTC560AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
PCO021.CR_F14 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO021_F14 3', mRNA sequence.
GT258280.1:376-395
AAGTGCCGCGGCAGTTGCCCCAACATCGTC376AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGAGATTGACATATAGATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGAGATTGACATATAGATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.082 | search_plus_done; http://172.18.8.135:50400/match?q=GCGAGATTGACATATAGATT&k=0&no_gap=0&offset=0&limit=50
0.521 | 0.430 | search_minus_done; http://172.18.8.135:50400/match?q=AATCTATATGTCAATCTCGC&k=0&no_gap=0&offset=0&limit=50
0.526 | 0.004 | cgi_end;

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