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Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 03:32:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR085533 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-015E10 5', mRNA sequence.
EX099243.1:132-151
CTCTGAAAAAACTCAAAAATCACACACAGA132GCGCGAGAAACTTTGATTTCACCTCTAAAAATTGCTCAGGAATGGCGCTT
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:23002704-23002723
CTCTGAAAAAACTCAAAAATCACACACAGA23002704GCGCGAGAAACTTTGATTTCACCTCTAAAAATTGCTCAGGAATGGCGCTT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:27069085-27069104
TTCTAAAAAAAACTCAAAATCACACACAGA27069085GCGCGAGAAACTTTGATTTCACCTCTAAATTTTTTTATCAAGAATGGCGC
Diabrotica virgifera virgifera genome assembly, chromosome: 5.
OU830628.1:99556128-99556147
CATATACAATTTATTGTCAAGGCTGGGGAG99556128GCGCGAGAAACTTTGATTTCAACAAAAGGGGGCGTGGTACAAAAAAGTTT
Caradrina clavipalpis genome assembly, chromosome: 13.
OW052100.1:761454-761473
GCTCAAAAGAAACTTCGCTGCGTCCCTCAA761454GCGCGAGAAACTTTGATTTCGTTATAATTGGTGTGAATTTAACAAATCAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_26769.
FX670122.1:1457-1476
GCGCCATTCTTGATAAAAAAATTTAGAGGT1457GAAATCAAAGTTTCTCGCGCTCTGTGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5934.
FX700743.1:1401-1420
AAGCGCCATTCCTGAGCAATTTTTAGAGGT1401GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Brassica napus genome assembly, chromosome: A10.
HG994364.1:3547676-3547695
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3547676GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Brassica rapa genome, scaffold: A10.
LR031577.1:3731665-3731684
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3731665GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:6093074-6093093
GCGCCATTCTTGATAAAAAAATTTAGAGGT6093074GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTGAGTTTTTTTTAGAA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:3762997-3763016
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3762997GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Diabrotica balteata genome assembly, chromosome: 9.
OU898284.1:114670518-114670537
CAAACTTTTTTGTACCACGCCCCCTTTGTT114670518GAAATCAAAGTTTCTCGCGCCCCCTCTTAACAATAAATTGTGTGGGCCCA

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