GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:49:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-087H10, 3' end sequence.
DK548579.1:431-449
CTGGTAAGATACTGGGATCTCTCGGCAGCT431GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica oleracea var. viridis mRNA, clone: KALE-106I17, 3' end sequence.
DK555877.1:435-453
CTGGTAAGATACTGGGATCTCTCGGCAGCT435GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
BR120965 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-80D09 5', mRNA sequence.
EX137135.1:39-57
CTGGTAAGATACTGGGATCTCTCGGCAGCT39GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
BNAOV1GH_T3_069_F05_14SEPT2007_037 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR447723.1:47-65
CTGGTAAGATACTGGGATCTCTCGGCAGCT47GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2180.
FX754129.1:1087-1105
CTGGTAAGATACTGGGATCTCTCGGCAGCT1087GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:44303600-44303618
CTGGTAAGATACTGGGATCTCTCGGCAGCT44303600GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica rapa genome, scaffold: A09.
LR031568.1:43434413-43434431
CTGGTAAGATACTGGGATCTCTCGGCAGCT43434413GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:53884077-53884095
CTGGTAAGATACTGGGATCTCTCGGCAGCT53884077GCGCTGCATCTTAGTCTCCCACAACTTTAGCTTTGTCATCTTCAACCCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7281.
FX710837.1:317-335
TGGGTTGAAGATGACAAAGCTAAAGTTGTG317GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG
BOGHS43TR BOGH Brassica oleracea genomic clone BOGHS43, genomic survey sequence.
BH480845.1:386-404
TGGGTTGAAGATGACAAAGCTAAAGTTGTG386GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG
Brassica napus genome assembly, chromosome: C05.
HG994369.1:14902745-14902763
TGGGTTGAAGATGACAAAGCTAAAGTTGTG14902745GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:14451606-14451624
TGGGTTGAAGATGACAAAGCTAAAGTTGTG14451606GGAGACTAAGATGCAGCGCAGCTGCCGAGAGATCCCAGTATCTTACCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGCTGCATCTTAGTCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGCTGCATCTTAGTCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.345 | 0.336 | search_plus_done; http://172.18.8.135:50400/match?q=GCGCTGCATCTTAGTCTCC&k=0&no_gap=0&offset=0&limit=50
0.387 | 0.042 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGACTAAGATGCAGCGC&k=0&no_gap=0&offset=0&limit=42
0.390 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).