GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 05:01:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

39RDBRT_UP_054_E03_30NOV2005_023 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
EE529061.1:43-62
TTGTTCAAGTTCTGAAATAAAAAGCTTGTG43GCGGCTTCCTAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTGCTC
BR074575 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-044D01 5', mRNA sequence.
EX088285.1:14-33
AAAAAAGCTTGTG14GCGGCTTCCTAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_12886.
FX699713.1:47-66
TTGTTCAAGTTCTGAAATAAAAAGCTTGTG47GCGGCTTCCTAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_23479.
FX733574.1:58-77
TTGTTCAAGTTCTGAAATAAAAAGCTTGTG58GCGGCTTCCTAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070M16, complete sequence.
AC189446.2:38976-38995
TTGTTCAAGTTCTGAAATAAAAAGCTTGTG38976GCGGCTTCCTAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:28530217-28530236
TTGTTCAAGTTCTGAAATAAAAAGCTTGTG28530217GCGGCTTCCTAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTGC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:28563563-28563582
TTGTTCAAGTTCTGAAATAAAAAGCTTGTG28563563GCGGCTTCCTAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTGC
Mamestra brassicae genome assembly, chromosome: 9.
LR990996.1:4628366-4628385
TTGTGCTTTCTAAAACAACCTGACGGAGCT4628366GCGGCTTCCTAAAACCCTAATACCGAGAATTCTGAAAACCCAACACAAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065L05, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
AC241056.1:54510-54529
AGAGAGAGAGAGAGAGAGGAAGTGGAAAGA54510TTAGGGTTTTAGGAAGCCGCCACAAGCTTTTTATTTCAGAACTTGAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGGCTTCCTAAAACCCTAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGGCTTCCTAAAACCCTAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.252 | 0.244 | search_plus_done; http://172.18.8.135:50400/match?q=GCGGCTTCCTAAAACCCTAA&k=0&no_gap=0&offset=0&limit=50
0.446 | 0.193 | search_minus_done; http://172.18.8.135:50400/match?q=TTAGGGTTTTAGGAAGCCGC&k=0&no_gap=0&offset=0&limit=42
0.447 | 0.001 | cgi_end;

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