GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:20:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2645581-2645600
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2645581GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:2498794-2498813
CTAATCTCTTTCCTCCTCCTCTCTGTTTCG2498794GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica rapa genome, scaffold: A07.
LR031574.1:2509654-2509673
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2509654GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:2521458-2521477
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2521458GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
KBrB080J08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB080J08, genomic survey sequence.
DX070982.1:640-659
GAGAGAGAGCGACTGAAACAATCTTCAGAT640ATTCTTATTTATAGGCCCGCCGAAACAGAGAGGAGGAGGAGGAGGAAAGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34139979-34139998
GAGAGAGAGCGACTGAAACAATCTTCAGAT34139979ATTCTTATTTATAGGCCCGCCGAAACAGAGAGGAGGAGGAAAGAGATTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGGGCCTATAAATAAGAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGGGCCTATAAATAAGAAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.103 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=GCGGGCCTATAAATAAGAAT&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCTTATTTATAGGCCCGC&k=0&no_gap=0&offset=0&limit=46
0.142 | 0.002 | cgi_end;

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