GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:50:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6646803-6646824
GCATAGAACTATAAGCAAGTACATATAATA6646803GCGTAGGTGTTAAATTTCTATTGTAGTTTATTTTTTTGGTAAATAAATTTCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6891718-6891739
GCAAAGAACTATAAGCAAGTACATCTAGTA6891718GCGTAGGTGTTAAATTTCTATTGTAGTTTATTTTTTTTGTAAATAAATTTCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6319263-6319284
GCATAGAACTATAAGCAAGTACATATAATA6319263GCGTAGGTGTTAAATTTCTATTGTAGTTTATTTTTTTGGTAAATAAATTTCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6808270-6808291
GCATAGAACTATAAGCAAGTACATATAATA6808270GCGTAGGTGTTAAATTTCTATTGTAGTTTATTTTTTTGGTAAATAAATTTCC
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6602625-6602646
GCAAAGAACTATAAGCAAGTACATCTAGTA6602625GCGTAGGTGTTAAATTTCTATTGTAGTTTATTTTTTTTGTAAATAAATTTCC
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:7005107-7005128
GCAAAGAACTATAAGCAAGTACTTCTAATA7005107GCGTAGGTGTTAAATTTCTATTGTAGTTTGTGTTTTTGGTAAATAAATTTCC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39938374-39938395
GGAAATTTATTTACCAAAAAAATAAACTAC39938374AATAGAAATTTAACACCTACGCTACTAGATGTACTTGCTTATAGTTCTTTGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36657313-36657334
GGAAATTTATTTACCAAAAAAAAAAACTAC36657313AATAGAAATTTAACACCTACGCTATTAGATGTACTTGCTTATAGTTCTTTGC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40236210-40236231
GGAAATTTATTTACCAAAAAAATAAACTAC40236210AATAGAAATTTAACACCTACGCTACTAGATGTACTTGCTTATAGTTCTTTGC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39527405-39527426
GGAAATTTATTTACCAAAAAAATAAACTAC39527405AATAGAAATTTAACACCTACGCTACTAGATGTACTTGCTTATAGTTCTTTGC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39085959-39085980
GGAAATTTATTTACCAAAAAAATAAACTAC39085959AATAGAAATTTAACACCTACGCTACTAGATGTACTTGCTTATAGTTCTTTGC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39548463-39548484
GGAAATTTATTTACAAAAAAAATAAACTAC39548463AATAGAAATTTAACACCTACGCTACTAGATGTACTTGCTTATAGTTCTTTGC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40387110-40387131
GGAAATTTATTTACCAAAAAAATAAACTAC40387110AATAGAAATTTAACACCTACGCTACTAGATGTACTTGCTTATAGTTCTTTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGTAGGTGTTAAATTTCTATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGTAGGTGTTAAATTTCTATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=GCGTAGGTGTTAAATTTCTATT&k=0&no_gap=0&offset=0&limit=50
0.112 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=AATAGAAATTTAACACCTACGC&k=0&no_gap=0&offset=0&limit=44
0.117 | 0.005 | cgi_end;

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