GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-15 16:10:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_7550.
FX671549.1:1481-1502
GTCTTCTCCTCACAGTTCTCCAAATGTGGT1481GCGTTTGGGACATCAGATTTGTTCATCCCTAGTTTCTTGAAATAGTCTTCAT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_45686.
FX753363.1:150-171
GTCCTCTCCTCACAGTTCTCCAAATGTGGA150GCGTTTGGGACATCAGATTTGTTCATCCATAGTTTCTTGAAATAGTCTTCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH014F10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.
AC234739.1:38899-38920
GTCCTCTCCTCACAGTTCTCCAAATGTGGA38899GCGTTTGGGACATCAGATTTGTTCATCCATAGTTTCTTGAAATAGTCTTCAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:3489053-3489074
GTCCTCTCCTTACAATTCTCCAAATGTGGA3489053GCGTTTGGGACATCAGATTTGTTTATCCCTTGTTTCTTGAAGTAGTCTTCAT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:54268517-54268538
GTCCTCTCCTCACAGTTCTCCAAATGTGGA54268517GCGTTTGGGACATCAGATTTGTTCATCCATAGTTTCTTGAAATAGTCTTCAT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39307478-39307499
GTCCTCTCCTCACAGTTCTCCAAATGTGGA39307478GCGTTTGGGACATCAGATTTGTTCATCCATAGTTTCTTGAAATAGTCTTCAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:3043623-3043644
GTCCTCTCCTTACAATTCTCCAAATGTGGA3043623GCGTTTGGGACATCAGATTTGTTTATCTGATGTTTCTTGAAGTAGTCTTCAT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:3118150-3118171
GTCCTCTCCTTACAATTCTCCAAATGTGGA3118150GCGTTTGGGACATCAGATTTGTTTATCCCTTGTTTCTTGAAGTAGTCTTCAT
Brassica rapa genome, scaffold: A09.
LR031568.1:2969787-2969808
GTCCTCTCCTTACAATTCTCCAAATGTGGA2969787GCGTTTGGGACATCAGATTTGTTTATCTGATGTTTCTTGAAGTAGTCTTCAT
Brassica rapa genome, scaffold: A06.
LR031569.1:49363017-49363038
GTCCTCTCCTCACAGTTCTCCAAATGTGGA49363017GCGTTTGGGACATCAGATTTGTTCATCCATAGTTTCTTGAAATAGTCTTCAT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:3291993-3292014
GTCCTCTCCTTACAATTCTCCAAATGTGGA3291993GCGTTTGGGACATCAGATTTGTTTATCCCTTGTTTCTTGAAGTAGTCTTCAT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:52979338-52979359
GTCCTCTCCTCACAGTTCTCCAAATGTGGA52979338GCGTTTGGGACATCAGATTTGTTCATCCATAGTTTCTTGAAATAGTCTTCAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:3098165-3098186
GTCCTCTCCTTACAATTCTCCAAATGTGGA3098165GCGTTTGGGACATCAGATTTGTTTATCTGATGTTTCTTGAAGTAGTCTTCAT
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:4623621-4623642
GTGCTCTCCTCACAATTCTCCAAATGTGGA4623621GCGTTTGGGACATCAGATTTGTTCATGCCTAGTTTGTTGAAGTAGTCTTCAT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:10825428-10825449
GTCTTCTCCTCACAGTTCTCCAAATGTGGT10825428GCGTTTGGGACATCAGATTTGTTCATCCCTAGTTTCTTGAAATAGTCTTCAT
Brassica oleracea var. viridis mRNA, clone: KALE-020H15, 5' end sequence.
DK463375.1:465-486
ATGAAGACTACTTCAAGAAACAAGGGATAA465ACAAATCTGATGTCCCAAACGCTCCACATTTGGAGAATTGTAAGGAGAGGAC
RS1AP35TFB RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW716024.1:254-275
ATGAAGACTATTTCAAGAAACTAGGGATGA254ACAAATCTGATGTCCCAAACGCACCACATTTGGAGAACTGTGAGGAGAAGAC
BN18DYSC_UP_098_H10_07MAR2008_066 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG561576.1:364-385
ATGAAGACTATTTCAAGAAACTATGGATGA364ACAAATCTGATGTCCCAAACGCTCCACATTTGGAGAACTGTGAGGAGAGGAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_20148.
FX695517.1:672-693
ATGAAGACTATTTCAAGAAACTATGGATGA672ACAAATCTGATGTCCCAAACGCTCCACATTTGGAGAACTGTGAGGAGAGGAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_23972.
FX695647.1:571-592
ATGAAGACTACTTCAAGAAACAAGGGATAA571ACAAATCTGATGTCCCAAACGCTCCACATTTGGAGAATTGTAAGGAGAGGAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_57251.
FX732598.1:363-384
ATGAAGACTATTTCAAGAAACTAGGGATGA363ACAAATCTGATGTCCCAAACGCACCACATTTGGAGAACTGTGAGGAGAAGAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10297.
FX752377.1:389-410
ATGAAGACTACTTCAAGAAACAAGGGATAA389ACAAATCTGATGTCCCAAACGCTCCACATTTGGAGAATTGTAAGGAGAGGAC
TSA: Raphanus sativus RS05171 mRNA sequence.
JT789718.1:1481-1502
ATGAAGACTATTTCAAGAAACTAGGGATGA1481ACAAATCTGATGTCCCAAACGCACCACATTTGGAGAACTGTGAGGAGAAGAC
KBrH015I17R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH015I17, genomic survey sequence.
CW988500.1:359-380
ATGAAGACTACTTCAAGAAACAAGGTATAA359ACAAATCTGATGTCCCAAACGCTCCACATTTGAAGAATTGGAAGGAGAGGAC
Brassica rapa subsp. pekinensis clone KBrH066L21, complete sequence.
CU695309.1:30040-30061
ATGAAGACTACTTCAAGAAACAAGGGATAA30040ACAAATCTGATGTCCCAAACGCTCCACATTTGGAGAATTGTAAGGAGAGGAC
Raphanus sativus DNA, microsatellite locus RM_1, cultivar: F1 hybrid of rat-tail radish and Harufuku.
AB608369.1:316-337
ATGAAGACTATTTCAAGAAACTAGGGATGA316ACAAATCTGATGTCCCAAACGCACCACATTTGGAGAACTGTGAGGAGAAGAC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:66045485-66045506
ATGAAGACTACTTCAAGAAACAAGGGATAA66045485ACAAATCTGATGTCCCAAACGCTCCACATTTGGAGAATTGTAAGGAGAGGAC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:42825071-42825092
ATGAAGACTATTTCAAGAAACTAGGGATGA42825071ACAAATCTGATGTCCCAAACGCACCACATTTGGAGAACTGTGAGGAGAAGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCGTTTGGGACATCAGATTTGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGTTTGGGACATCAGATTTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.183 | 0.174 | search_plus_done; http://172.18.8.135:50400/match?q=GCGTTTGGGACATCAGATTTGT&k=0&no_gap=0&offset=0&limit=50
0.451 | 0.269 | search_minus_done; http://172.18.8.135:50400/match?q=ACAAATCTGATGTCCCAAACGC&k=0&no_gap=0&offset=0&limit=35
0.460 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).