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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-17 06:34:22, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cucumis melo isolate PI 511890 chromosome 3.
CP136101.1:28412412-28412432
ATAGTGAAAAGTGCGAAAAAAAATACCTCA28412412GCTAAGGAAAGGGTTTGTTCGCTCTGGGCTTCCGCCATGGATGGAAGAAGA
Cucumis melo genomic chromosome, chr_3.
LN713257.1:26883375-26883395
ATAGTGAAAAGTGCGAAAAAAAATACCTCA26883375GCTAAGGAAAGGGTTTGTTCGCTCTGGGCTTCCGCCATGGATGGAAGAAGA
Cucumis melo subsp. agrestis EST, clone AI_02-C03-M13R.
AM714410.2:70-90
TCTTCTTCCATCCATGGCGGAAGCCCAGAG70CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
Cucumis melo subsp. agrestis EST, clone AI_22-A05-M13R.
AM715980.2:144-164
TCTTCTTCCATCCATGGCGGAAGCCCAGAG144CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
Cucumis melo subsp. melo EST, clone PS_18-D10-M13R.
AM717535.1:170-190
TCTTCTTCCATCCATGGCGGAAGCCCAGAG170CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
Cucumis melo subsp. agrestis EST, clone A_17-G02-M13R.
AM730099.1:124-144
TCTTCTTCCATCCATGGCGGAAGCCCAGAG124CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAGGAGGA
Cucumis melo subsp. melo EST, clone 15d_23-H01-M13R.
AM736620.2:100-120
TCTTCTTCCATCCATGGCGGAAGCCCAGAG100CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
Cucumis melo subsp. melo EST, clone 46d_40-A03-M13R.
AM742727.2:141-161
TCTTCTTCCATCCATGGCGGAAGCCCAGAG141CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
F-578 Melon phloem library F Cucumis melo cDNA clone PH7A2, mRNA sequence.
EB714905.1:90-110
TCTTCTTCCATCCATGGCGGAAGCCCAGAG90CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
EST11014122 CM-TEa library Cucumis melo cDNA clone TEa0002E12, mRNA sequence.
JG472409.1:105-125
TCTTCTTCCATCCATGGCGGAAGCCCAGAG105CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
EST11019897 CM-VEa library Cucumis melo cDNA clone VEa0011M22, mRNA sequence.
JG478184.1:100-120
TCTTCTTCCATCCATGGCGGAAGCCCAGAG100CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
EST11036877 MNRP2 library Cucumis melo cDNA clone CA5YL22FM1, mRNA sequence.
JG495164.1:137-157
TCTTCTTCCATCCATGGCGGAAGCCCAGAG137CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
EST11051984 VFTP2 library Cucumis melo cDNA clone HA6YA13FM1, mRNA sequence.
JG510271.1:143-163
TCTTCTTCCATCCATGGCGGAAGCCCAGAG143CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
EST11056732 DFTP2 library Cucumis melo cDNA clone LA1YG05FM1, mRNA sequence.
JG515019.1:162-182
TCTTCTTCCATCCATGGCGGAAGCCCAGAG162CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
EST11068284 VFLP2 library Cucumis melo cDNA clone GA48YA05FM1, mRNA sequence.
JG526571.1:124-144
TCTTCTTCCATCCATGGCGGAAGCCCAGAG124CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
EST11072993 VFLP2 library Cucumis melo cDNA clone GA35YL19FM1, mRNA sequence.
JG531280.1:143-163
TCTTCTTCCATCCATGGCGGAAGCCCAGAG143CGAACAAACCCTTTCCTTAGCTGAGCAATATTCCTTGAAAGAAAAAGAGGA
Cucumis melo genomic scaffold, anchoredscaffold00014.
LN681823.1:2504075-2504095
TCTTCTTCCATCCATGGCGGAAGCCCAGAG2504075CGAACAAACCCTTTCCTTAGCTGAGGTATTTTTTTTCGCACTTTTCACTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTAAGGAAAGGGTTTGTTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTAAGGAAAGGGTTTGTTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50800/match?q=GCTAAGGAAAGGGTTTGTTCG&k=0&no_gap=0&offset=0&limit=50
1.043 | 0.780 | search_minus_done; http://172.18.8.135:50800/match?q=CGAACAAACCCTTTCCTTAGC&k=0&no_gap=0&offset=0&limit=48
1.053 | 0.010 | cgi_end;

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