GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 16:26:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, clone: LjT45I18, TM1472.
AP010201.1:121921-121940
AGAGGAAGGCTAAAAGGAACAGAAAATTAA121921GCTACATCATCCAAACACAAGAAGATAATGACATAATACGTTGAATGTCG
Alisma plantago-aquatica genome assembly, chromosome: 6.
OY856414.1:576214071-576214090
TCAAAACGTCGAAGTGGATTGTCTTGCAAA576214071GCTACATCATCCAAACACAAATATTGTTGTCTATGAAACTCCTCCTATGG
Abrostola tripartita genome assembly, chromosome: 10.
HG996496.1:3140271-3140290
ATCGATCGTAATTAAGCACGTAGATTTAAC3140271GCTACATCATCCAAACACAATAATTTGACATCGCTAAATTGATTTATCTG
Noctua janthe genome assembly, chromosome: 14.
OU342566.1:17317010-17317029
CACTAATAACAATTTTCGTTTGAAATCATT17317010GCTACATCATCCAAACACAAAATATTTTGTCAGGGACCGAAAAGGTTACC
Lotus japonicus genomic DNA, chromosome 4, clone: LjT29M06, TM1286.
AP007960.2:100461-100480
CGACATCCACCGCCTTCTATCATTACCTTC100461TTGTGTTTGGATGATGTAGCTTAGTTTATGTTCTTTTTAGCTTTGCTCTT
Lotus japonicus genomic DNA, chromosome 4, clone: LjT15N19, TM0097b.
AP004536.1:43543-43562
CGACATCCACCGCCTTCTATCATTACCTTC43543TTGTGTTTGGATGATGTAGCTTAGTTTATGTTCTTTTTAGCTTTGCTCTT
Lotus japonicus B-129 DNA, chromosome 3, complete sequence.
AP022631.1:11525821-11525840
CGACATTCAACGTATTATGTCATTATCTTC11525821TTGTGTTTGGATGATGTAGCTTAATTTTCTGTTCCTTTTAGCCTTCCTCT
Lotus japonicus B-129 DNA, chromosome 3, complete sequence.
AP022631.1:18523275-18523294
CGACATCCACCGTCTTCTGTCATTGCCTCC18523275TTGTGTTTGGATGATGTAGCTTAGTTCATTTTCTCTTTTAGACTTTCTCT
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:82723947-82723966
CGACATCCACCGCCTTCTATCATTACCTTC82723947TTGTGTTTGGATGATGTAGCTTAGTTTATGTTCTTTTTAGCTTTGCTCTT
Noctua janthina genome assembly, chromosome: 14.
OY755064.1:1032459-1032478
GGTAACCTTTTCGGTCCCTGACAAAATATT1032459TTGTGTTTGGATGATGTAGCAATGATTTCAAACGAAAATTGTTATTAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTACATCATCCAAACACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTACATCATCCAAACACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=GCTACATCATCCAAACACAA&k=0&no_gap=0&offset=0&limit=50
0.129 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTGTTTGGATGATGTAGC&k=0&no_gap=0&offset=0&limit=46
0.133 | 0.004 | cgi_end;

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