GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 12:49:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CFES26C12, 5' end sequence.
FY403628.1:579-598
GCACCAGGCTCTGCTGCCTGCATTGCCTGG579GCTACTTTCGTGGGATCTGCCTTAGGAGGCTCTCCAGCTGTTTTTGGGAG
TSA: Dianthus superbus Ds_CL7287Contig1 mRNA sequence.
JL393569.1:10-29
ATTGCCTGG10GCTACTTTCGTGGGATCTGCCTTAGGAGGCTCTCCAGCTGTTTTTAGGGA
Dianthus caryophyllus mRNA, clone: CES02O24, 5' end sequence.
FY383198.1:590-609
CTCCCAAAAACAGCTGGAGAGCCTCCTAAG590GCAGATCCCACGAAAGTAGCCCAGGCAATGCAGGCAGCAGAGCCTGGTGC
Dianthus caryophyllus mRNA, clone: CES09B04, 5' end sequence.
FY385531.1:590-609
CTCCCAAAAACAGCTGGAGAGCCTCCTAAG590GCAGATCCCACGAAAGTAGCCCAGGCAATGCAGGCAGCAGAGCCTGGTGC
Dianthus caryophyllus mRNA, clone: CFES19_E23, 5' end sequence.
FY401083.1:612-631
CTCCCAAAAACAGCTGGAGAGCCTCCTAAG612GCAGATCCCACGAAAGTAGCCCAGGCAATGCAGGCAGCAGAGCCTGGTGC
TSA: Dianthus caryophyllus mRNA, contig: CAK09.23.C1.
FX296515.1:702-721
CTCCCAAAAACAGCTGGAGAGCCTCCTAAG702GCAGATCCCACGAAAGTAGCCCAGGCAATGCAGGCAGCAGAGCCTGGTGC
Siphonodentalium dalli isolate Sc116.8C chromosome VI.
CP136066.1:6271985-6272004
CACGTTCGGCACTTCATCGGATACTGTTCA6271985GCAGATCCCACGAAAGTAGCTTAACCGATTTTTAACTATAGGATAGTCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTACTTTCGTGGGATCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTACTTTCGTGGGATCTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.195 | 0.186 | search_plus_done; http://172.18.8.135:50400/match?q=GCTACTTTCGTGGGATCTGC&k=0&no_gap=0&offset=0&limit=50
0.469 | 0.274 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGATCCCACGAAAGTAGC&k=0&no_gap=0&offset=0&limit=48
0.472 | 0.003 | cgi_end;

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