GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:48:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CV03063B1E10.f1 CV03-normalized library Euphorbia esula cDNA clone CV03063B1E10.f1 5, mRNA sequence.
DV132636.1:294-316
GAACTCTCGCACATGTATGTTGACAATGCT294GCTATGCAGCTTGTTCGCAATCCCAAACAGTTTGATACAATCGTGACGAACAA
CGN-39109 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w3c22 5', mRNA sequence.
DV694562.1:136-158
GAACTCTCACACATGTACGTTGACAATGCT136GCTATGCAGCTTGTTCGCAATCCGAAGCAGTTCGACACAATTGTGACAAATAA
CGN-49025 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w25d16 5', mRNA sequence.
DV702613.1:136-158
GAACTCTCACACATGTACGTTGACAATGCT136GCTATGCAGCTTGTTCGCAATCCGAAGCAGTTCGACACAATTGTGACAAATAA
CGN-49480 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w26d16 5', mRNA sequence.
DV702993.1:147-169
GAACTCTCACACATGTACGTTGACAATGCT147GCTATGCAGCTTGTTCGCAATCCGAAGCAGTTCGACACAATTGTGACAAATAA
TransId-200792 CarCatBudEnri Coffea arabica cDNA clone CarCatBudEnri_16-E11 similar to 3-isopropylmalate dehydrogenase 2, chloroplast precursor - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GR992827.1:429-451
GAACTCTCACACATGTACGTTGACAATGCT429GCTATGCAGCTTGTTCGCAATCCGAAGCAGTTCGACACAATTGTGACAAATAA
CR00-XX-FV2-009-E08-EM.F Coffea racemosa FV2 Coffea racemosa cDNA clone CR00-XX-FV2-009-E08-EM, mRNA sequence.
GT663806.1:145-167
GAACTCTCACACATGTACGTTGACAATGCT145GCTATGCAGCTTGTTCGCAATCCGAAGCAGTTCGACACAATTGTGACAAATAA
CA00-XX-CS1-041-E03-JE.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-041-E03-JE, mRNA sequence.
GW431685.1:193-215
GAACTCTCACACATGTACGTTGACAATGCT193GCTATGCAGCTTGTTCGCAATCCGAAGCAGTTCGACACAATTGTGACAAATAA
CPCM-8 Coffee microsatellite sequence Coffea canephora STS genomic, sequence tagged site.
BV722911.1:84-106
GAACTCTCACACATGTACGTTGACAATGCT84GCTATGCAGCTTGTTCGCAATCCGAAGCAGGTTTTCTAGATGTCTTTACATTG
CPCM-13 Coffee microsatellite sequence Coffea canephora STS genomic, sequence tagged site.
BV722913.1:70-92
GAACTCTCACACATGTACGTTGACAATGCT70GCTATGCAGCTTGTTCGCAATCCGAAGCAGGTTTTCTAGATGTCTTTACATTG
Euphorbia lathyris genome assembly, chromosome: 3.
OY755222.1:70305234-70305256
GAACTTTCACACATGTATGTTGACAATGCT70305234GCTATGCAGCTTGTTCGCAATCCAAAACAGGTCAGAAAAGTTTTTTTTTTTTT
Euphorbia peplus chromosome 7.
CP110843.1:21239483-21239505
AACCCAAAAAAGAAGATTCTGACCTGTTTT21239483GGATTGCGAACAAGCTGCATAGCAGCATTGTCAACATACATATGTGAGAGTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTATGCAGCTTGTTCGCAATCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTATGCAGCTTGTTCGCAATCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.578 | 0.569 | search_plus_done; http://172.18.8.135:50400/match?q=GCTATGCAGCTTGTTCGCAATCC&k=0&no_gap=0&offset=0&limit=50
0.683 | 0.105 | search_minus_done; http://172.18.8.135:50400/match?q=GGATTGCGAACAAGCTGCATAGC&k=0&no_gap=0&offset=0&limit=40
0.683 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).