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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 18:33:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST 9081 Green Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bga011k06q 5', mRNA sequence.
CV047374.1:220-239
AGGTCCATGGACTCCTAGAGAAGACACATT220GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
SD1MrF3 YG/PR Prunus cerasus cDNA, mRNA sequence.
EE487874.1:199-218
AGGTCCATGGACTCCTAGAGAAGACACATT199GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
Pm_1587 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW870161.1:304-323
AGGTCCATGGACTCCTAGAGAAGACACATT304GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
Prunus mume strain hongmei clone P17 SSR marker genomic sequence.
GU458018.1:191-210
AGGTCCATGGACTCCTAGAGAAGACACATT191GCTCACCAAGTATATTGAAG
Prunus mume strain oushuku clone P18 SSR marker genomic sequence.
GU458019.1:193-212
AGGTCCATGGACTCCTAGAGAAGACACATT193GCTCACCAAGTATATTGAAG
Prunus avium R2R3-MYB transcription factor (MYBPA1) mRNA, complete cds.
GU938690.1:72-91
AGGTCCATGGACTCCTAGAGAAGACACATT72GCTCACCAAGTATATTGAAGCTCATGGGGAAGGCCATTGGAGATCCATGC
Rosa rugosa MYB5 mRNA, complete cds.
MH939144.1:122-141
AGGTCCATGGACTCCCAGAGAGGACACATT122GCTCACCAAGTATATTGAAGCTCATGGTGAAGGCCATTGGAGATCCTTGC
Rosa chinensis MYB5 transcription factor mRNA, complete cds.
PP130369.1:72-91
AGGTCCATGGACTCCCAGAGAGGACACATT72GCTCACCAAGTATATTGAAGCTCATGGTGAAGGCCATTGGAGATCCTTGC
Dioctria linearis genome assembly, chromosome: 1.
OZ005740.1:243051002-243051021
GATGCATATTAAACTAACCATACAGCGTGA243051002GCTCACCAAGTATATTGAAGCTATACCATAGGGAAATAAGGAACCAATTA
RGUS1306 Cherry differentially expressed Prunus avium x P. cerasus x P. canescens cDNA clone RGUS1306, mRNA sequence.
DV175422.1:93-112
GCATGGATCTCCAATGGCCTTCCCCATGAG93CTTCAATATACTTGGTGAGCAATGTGTCTTCTCTAGGAGTCCATGGACCT
Prunus dulcis DNA, pseudomolecule Pd02.
AP019298.1:17543289-17543308
GCATGGATCTCCAATGGCCTTCCCCATGAG17543289CTTCAATATACTTGGTGAGCAATGTGTCTTCTCTAGGAGTCCATGGACCT
Rosa rugosa genome assembly, chromosome: 6.
OY288196.1:40167743-40167762
GCAAGGATCTCCAATGGCCTTCACCATGAG40167743CTTCAATATACTTGGTGAGCAATGTGTCCTCTCTGGGAGTCCATGGACCT
Potentilla sterilis genome assembly, chromosome: 13.
OY821766.1:31937942-31937961
GCAAGGATCTCCAATGGCCTTCACCATGAG31937942CTTCAATATACTTGGTGAGCAATGTGTCCTCTCTGGGAGTCCAAACACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTCACCAAGTATATTGAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCACCAAGTATATTGAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.300 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCACCAAGTATATTGAAG&k=0&no_gap=0&offset=0&limit=50
0.376 | 0.075 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCAATATACTTGGTGAGC&k=0&no_gap=0&offset=0&limit=41
0.379 | 0.003 | cgi_end;

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