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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 03:07:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0124435 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV119123.1:231-255
CAAGCTCTCCATAGCACTCTCCAACCCAGA231GCTCATCTCAGCCAACACATGAGGATCATTATAATGCTGAACAGCCTGAACAATA
0127724 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV122412.1:184-208
CAAGCTCTCCATCGCACTCTCCAGCCCAGA184GCTCATCTCAGCCAACACATGAGGATCATTATAATGCTGAACAGCCTGAACAATA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_34160.
FX740758.1:266-290
CAAGCTCTCCATCGCACTCTCCAACCCAGA266GCTCATCTCAGCCAACACATGAGGATCATTATAATGCTGAACAGCCTGAACAATA
TSA: Chorispora bungeana CK_01212 mRNA sequence.
JW989278.1:250-274
TAAGTTTTCCATTTCCATTTCAAGCCCAGA250GCTCATCTCAGCCAACACATGAGGATCATTGTAATGCTGAACAGCTTGAACAATG
KBrH101G01F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH101G01, genomic survey sequence.
DU116270.1:516-540
CAAGCTCTCCATCGCACTCTCCAACCCAGA516GCTCATCTCAGCCAACACATGAGGATCATTATAATGCTGAACAGCCTGAACAATA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8777894-8777918
CAAGCTCTCCATCGCACTCTCCAGCCCAGA8777894GCTCATCTCAGCCAACACATGAGGATCATTATAATGCTGAACAGCCTGAACAATA
Brassica oleracea var. viridis mRNA, clone: KALE-050I24, 3' end sequence.
DK534480.1:540-564
TATTGTTCAGGCTGTTCAGCATTATAATGA540TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTGGAGAGTGCGATGGAGAGCTTG
8RDBRH_UP_014_F11_12SEP2003_085 Brassica rapa - 8RDBRH Brassica rapa cDNA 5', mRNA sequence.
DY009916.1:173-197
TATTGTTCAGGCTGTTCAGCATTATAATGA173TCCTCATGTGTTGGCTGAGATGAGCTCTGGGTTGGAGAGTGCTATGGAGAGCTTG
20ACACDS_UP_015_B11_04NOV2004_093 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
EE406680.1:226-250
TATTGTTCAGGCTGTTCAGCATTATAATGA226TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTGGAGAGTGCGATGGAGAGCTTG
BNBS4DCT_UP_014_C05_24MAR2005_043 Brassica napus seeds BNBS4DCT Brassica napus cDNA 5', mRNA sequence.
EE454437.1:486-510
TATTGTTCAGGCTGTTCAGCATTATAATGA486TCCTCATGTGTTGGCTGAGATGAGCTCTGGGTTGGAGAGTGCTATGGAGAGCTTG
BNBS4DCT_UP_025_B04_26MAR2005_030 Brassica napus seeds BNBS4DCT Brassica napus cDNA 5', mRNA sequence.
EE455259.1:365-389
TATTGTTCAGGCTGTTCAGCATTATAATGA365TCCTCATGTGTTGGCTGAGATGAGCTCTGGGTTGGAGAGTGCTATGGAGAGCTTG
BNSCS2CT_UP_106_B02_20APR2007_014 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV023499.1:467-491
TATTGTTCAGGCTGTTCAGCATTATAATGA467TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTGGAGAGTGCGATGGAGAGCTTG
BNSCS2CT_UP_201_B07_27APR2007_061 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV030458.1:382-406
TATTGTTCAGGCTGTTCAGCATTATAATGA382TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTGGAGAGTGCGATGGAGAGCTTG
BNSCS2CT_UP_283_F10_25MAY2007_070 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV036338.1:592-616
GATTGTTCAGGCTGTTCAGCATTATAATGA592TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTGGAGAGTGCGATGGAGAGCTTG
TSA: Chorispora bungeana T_10031 mRNA sequence.
KA046861.1:1110-1134
CATTGTTCAAGCTGTTCAGCATTACAATGA1110TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTTGAAATGGAAATGGAAAGCTTA
BOGKH73TF BOGK Brassica oleracea genomic clone BOGKH73, genomic survey sequence.
BH475329.1:569-593
TATTGTTCAGGCTGTTCAGCATTATAATGA569TCCTCATGTGTTGGCTGAGATGAGC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:39739551-39739575
TATTGTTCAGGCTGTTCAGCATTATAATGA39739551TCCTCATGTGTTGGCTGAGATGAGCTCTGGGTTGGAGAGTGCGATGGAGAGCTTG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:26624419-26624443
TATTGTTCAGGCTGTTCAGCATTATAATGA26624419TCCTCATGTGTTGGCTGAGATGAGCTCTGGGTTGGAGAGTGCTATGGAGAGCTTG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:44599126-44599150
TATTGTTCAGGCTGTTCAGCATTATAATGA44599126TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTGGAGAGTGCGATGGAGAGCTTG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:43697229-43697253
TATTGTTCAGGCTGTTCAGCATTATAATGA43697229TCCTCATGTGTTGGCTGAGATGAGCTCTGGGCTGGAGAGTGCGATGGAGAGCTTG

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