GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:36:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sambucus nigra genome assembly, chromosome: 15.
OX422221.1:472387397-472387418
AATGCAAGGCCAAAAATGACATTTGTAGCA472387397GCTCCAGTGCGGCAAGAATCAGCAACATCTTGTACAGGGCTGAAAATTAGTC
Sequence 3701 from patent US 9551006.
KH516271.1:1426-1447
GCAATGCATACAGCCCTGTTCAAGATGTTG1426CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
Sequence 3701 from patent US 10457952.
MO459447.1:1426-1447
GCAATGCATACAGCCCTGTTCAAGATGTTG1426CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
m.07.E14.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence.
CK652175.1:217-238
GCAATGCATACAGCCCTGTTCAAGATGTTG217CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
m.09.C6.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence.
CK652538.1:223-244
GCAATGCATACAGCCCTGTTCAAGATGTTG223CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT
43 Cassava root cDNA library Manihot esculenta cDNA 5' similar to vacuolar proton inorganic pyrophosphatase (H+ PPase), mRNA sequence.
DN740360.1:396-417
GCAATGCATACAGCCCTGTTCAAGATGTTG396CTGATTCTTGCCGCACTGGAGCTGCCACTAACGTTATTTTTGGGCTTGCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTCCAGTGCGGCAAGAATCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCCAGTGCGGCAAGAATCAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCCAGTGCGGCAAGAATCAG&k=0&no_gap=0&offset=0&limit=50
0.309 | 0.205 | search_minus_done; http://172.18.8.135:50400/match?q=CTGATTCTTGCCGCACTGGAGC&k=0&no_gap=0&offset=0&limit=49
0.312 | 0.003 | cgi_end;

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