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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:17:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2015527085-A/1: ENGINEERED TRANSGENE INTEGRATION PLATFORM (ETIP).
HZ412808.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
JP 2015529464-A/1: FAD2 PERFORMANCE LOCI AND CORRESPONDING TARGET SITE SPECIFIC BINDING PROTEINS CAPABLE OF INDUCING TARGETED BREAKS.
HZ438507.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
JP 2015531598-A/1: ENGINEERED TRANSGENE INTEGRATION PLATFORM (ETIP).
HZ467106.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
KR 1020150043538-A/1: FAD2 PERFORMANCE LOCI AND CORRESPONDING TARGET SITE SPECIFIC BINDING PROTEINS CAPABLE OF INDUCING TARGETED BREAKS.
LG058229.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
KR 1020150046345-A/1: ENGINEERED TRANSGENE INTEGRATION PLATFORM (ETIP) FOR GENE TARGETING AND TRAIT STACKING.
LG058628.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
KR 1020150052241-A/1: FLUORESCENCE ACTIVATED CELL SORTING (FACS) ENRICHMENT TO GENERATE PLANTS.
LG058855.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
Sequence 1 from patent US 9963711.
MI647884.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
Sequence 1 from patent US 10577616.
MO929759.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
Sequence 1 from Patent EP3404099.
MP051754.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
Sequence 1 from patent US 10640779.
MV136271.1:41397-41420
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA41397GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0172268 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV136357.1:460-483
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA460GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0141600 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV151678.1:308-331
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA308GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0142257 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV152335.1:322-345
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA322GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0142407 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV152485.1:304-327
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA304GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0079332 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155471.1:487-510
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA487GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0157624 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV173986.1:571-594
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA571GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104722 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203569.1:458-481
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA458GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104723 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203570.1:458-481
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA458GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104729 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203576.1:458-481
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC458GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
0104733 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203580.1:457-480
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA457GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104734 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203581.1:459-482
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA459GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104743 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203590.1:456-479
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA456GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104760 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203607.1:459-482
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC459GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
0104766 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203613.1:461-484
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA461GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104767 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203614.1:443-466
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA443GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104784 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203631.1:458-481
ATTCCGTACTCTCTGTCAACGGTGGCCAAA458GCTCCCCTCAACCAATCCCACTCAGACGAGTCATACTGAGGCAAGGAAGGATGC
0104793 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203640.1:468-491
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA468GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCACGGAAGGATGC
0104794 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203641.1:459-482
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA459GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104808 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203655.1:394-417
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA394GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104820 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203667.1:378-401
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC378GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
0104827 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203674.1:396-419
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA396GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104830 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203677.1:388-411
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC388GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
0104836 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203683.1:391-414
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA391GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104844 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203691.1:391-414
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA391GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104852 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203699.1:395-418
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA395GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104865 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203712.1:395-418
ATTCCGTAGTCGCTGTCAACGGTGGCCAAA395GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAACGATGC
0104888 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203735.1:437-460
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA437GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104919 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203766.1:365-388
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA365GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104921 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203768.1:367-390
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC367GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
0104922 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203769.1:366-389
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA366GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104923 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203770.1:365-388
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA365GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104929 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203776.1:365-388
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA365GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104930 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203777.1:367-390
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA367GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104932 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203779.1:366-389
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA366GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104933 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203780.1:366-389
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA366GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104936 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203783.1:368-391
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA368GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104937 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203784.1:366-389
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA366GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104940 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203787.1:367-390
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA367GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104942 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203789.1:366-389
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA366GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104943 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203790.1:368-391
ATTCCGTATTCTCTGTCAACGGTGGCCAAA368GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCACGGAAGGATGC
0104945 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203792.1:365-388
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA365GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
0104946 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203793.1:366-389
ATTCCGTAGTCTCTGTCAACGGTGGCCAAA366GCTCCCCTCAACCAATCCCACTCAGACGAGTCATAGTGAGGCAGGGAAGGATGC
BR009496 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-013F01 5', mRNA sequence.
EX024852.1:494-517
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC494GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
BR010734 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-029C12 5', mRNA sequence.
EX026090.1:557-580
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC557GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
BR010817 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-030D05 5', mRNA sequence.
EX026173.1:476-499
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC476GCTCCCCTCAACCAATCCCACTCAGACGAATC
BR011824 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-043F10 5', mRNA sequence.
EX027180.1:557-580
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC557GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
BR013859 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-073C11 5', mRNA sequence.
EX029215.1:343-366
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC343GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
BR013886 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-073F09 5', mRNA sequence.
EX029242.1:493-516
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC493GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
BR014769 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-085G11 5', mRNA sequence.
EX030125.1:457-480
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC457GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
BR019792 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-167D05 5', mRNA sequence.
EX035148.1:557-580
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC557GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
KBrB094C17R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB094C17, genomic survey sequence.
DX081287.1:526-549
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC526GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGG
KBrB094C17F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB094C17, genomic survey sequence.
ED511071.1:543-566
ATCCCGTAGTCTCTGTCAACGGTAGCCAAC543GCTCCCCTCAACCAATCCCACTCAGACGAATCGTAGTGAGGCAGGGAAGGATGC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:4656314-4656337
ATTCCGTAGTCTCTGTCCACGGTAGCCAAG4656314GCTCCCCTCAACCAATCCCACTCAGAGGAGTCGTAGTGAGGCAGCGAAGGATGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTCCCCTCAACCAATCCCACTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCCCCTCAACCAATCCCACTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.420 | 3.411 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCCCCTCAACCAATCCCACTCA&k=0&no_gap=0&offset=0&limit=50
3.602 | 0.182 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGTGGGATTGGTTGAGGGGAGC&k=0&no_gap=0&offset=0&limit=0
3.602 | 0.000 | cgi_end;

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