GGGenome | Results

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2025-04-09 04:34:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Gymnoscopelus microlampas genome assembly, chromosome: 19.
OY732721.1:24441410-24441429

TCTCACCAACTCACTTTCTTCCATGGCATG24441410GCTCCTCCTCCTCAGAGATAAGTAAATGATAATGGGACAATGAGTGTACT

39RDBRT_UP_046_H06_22JUL2004_034 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272860.1:2-21

G2GCTCCTCCTCCTCAGAGATAAGGTGGTGTTGTGTGTGTGTGTCATCATTC

BR070352 pistil cDNA library KCOV Brassica rapa subsp. pekinensis cDNA clone KCOV-13D02 5', mRNA sequence.
EX115653.1:2-21

G2GCTCCTCCTCCTCAGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTC

BR070368 pistil cDNA library KCOV Brassica rapa subsp. pekinensis cDNA clone KCOV-13F02 5', mRNA sequence.
EX115669.1:2-21

G2GCTCCTCCTCCTCAGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTC

BR070773 pistil cDNA library KCOW Brassica rapa subsp. pekinensis cDNA clone KCOW-01D02 5', mRNA sequence.
EX116074.1:2-21

G2GCTCCTCCTCCTCAGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTC

BR070789 pistil cDNA library KCOW Brassica rapa subsp. pekinensis cDNA clone KCOW-01F02 5', mRNA sequence.
EX116090.1:2-21

G2GCTCCTCCTCCTCAGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTC

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
AC189521.2:57898-57917

ATAAATCCAAAAGAGAGAGAGAGTGAGGTT57898GCTCCTCCTCCTCAGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTC

uw27d11.y1 Soares_thymus_2NbMT Mus musculus cDNA clone IMAGE:3417909 5' similar to gb:X86694 M.musculus mRNA for astrocytic phosphoprotein, PEA-15 (MOUSE), mRNA sequence.
BE847498.1:369-388

GGTGGAGGACTACAAAATCCTTGAGCTGGA369TATCTCTGAGGAGGAGGAGCTGGTCAC

Brassica rapa genome, scaffold: A01.
LR031571.1:115804-115823

GAATGATGACACACACACACACCACCACCT115804TATCTCTGAGGAGGAGGAGCAACCTCACTCTCTCTCTCTCTTTTGGATTT

Aegilops longissima genome assembly, chromosome: 2S.
LR881070.1:392249606-392249625

GAAAAGCGCTACCGGGGTCCTCCAAAGATG392249606TATCTCTGAGGAGGAGGAGCGACAGCTACTGGCTGAGATTCATGCCGGTC

Brassica rapa genome assembly, chromosome: A01.
LS974617.2:115674-115693

GAATGATGACACACACACACACCACCACCT115674TATCTCTGAGGAGGAGGAGCAACCTCACTCTCTCTCTCTCTTTTGGATTT

Aegilops speltoides subsp. speltoides genome assembly, chromosome: 7B.
OX082603.1:544501539-544501558

GAAAAGCGCCACCGGAGTCCGTCAAAGGTG544501539TATCTCTGAGGAGGAGGAGCGGCAGCTCCTGGCTGAGATTCATGCCGGTC

Parasteatoda lunata genome assembly, chromosome: 2.
OX421971.1:128794329-128794348

TAAAGTGGCCTCGAGTCAGGCCACTCCAGA128794329TATCTCTGAGGAGGAGGAGCTGCTTTCCAGGCTCTCACAGTACACGGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.008 | 0.008 | search_start;
0.372 | 0.364 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCCTCCTCCTCAGAGATA&k=0&no_gap=0&offset=0&limit=50
0.423 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=TATCTCTGAGGAGGAGGAGC&k=0&no_gap=0&offset=0&limit=43
0.427 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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