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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 03:26:04, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH056_01171m, 5' end sequence.
AB450728.1:397-419
AGGCCAACTTTTCCCTTCCGGAGGCAATTA397GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Mdfw2001o19.x1 Mdfw Malus domestica cDNA clone Mdfw2001o19 3' similar to SW:RLA2_PARAR P41099 60S ACIDIC RIBOSOMAL PROTEIN P2, mRNA sequence.
CN443920.1:468-490
AGGCCAACTTTTCCCTTCCAGAGGCAATTA468GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Mdlr7003L07.g1 Apple_EST_Mdlr Malus domestica cDNA similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
DR990254.1:372-394
AGGCCAACTTTTCCCTTCCAGAGGCAATTA372GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Mdlr7005H04.g1 Apple_EST_Mdlr Malus domestica cDNA similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
DR990505.1:360-382
AGGCCAACTTTTCCCTTCCAGAGGCAATTA360GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Mdas9011D21.g1 Apple_EST_Mdas Malus domestica cDNA similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
DR995746.1:381-403
AGGCCAACTTTTCCCTTCCAGAGGCAATTA381GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Mdfwf2090G06_e21141.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
GO547670.1:456-478
AGGCCAACTTTTCCCTTCCAGAGGCAATTA456GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Mdfws2068L05_e23120.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
GO568672.1:371-393
AGGCCAACTTTTCCCTTCCGGAGGCAATTA371GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Mdfws2074A03_e23754.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis], mRNA sequence.
GO569103.1:448-470
AGGCCAACTTTTCCCTTCCAGAGGCAATTA448GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Pyrus pyrifolia mRNA, clone: NFR6_01_69, 3' end sequence, expressed in fruit.
HX742059.1:382-404
AGGCCAACTTTTCCCTTCCAGAGGCAATTA382GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAAAAGTTGAATCCTGTCA
Md-10 Granny Smith apple skin coloration supression substractive hybridization cDNA library Malus domestica cDNA, mRNA sequence.
JK750324.1:35-57
AGGCCAACTTTTCCCTTCCAGAGGCAATTA35GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:2030316-2030338
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2030316GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:2157390-2157412
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2157390GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:2230985-2231007
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2230985GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:1919788-1919810
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1919788GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:1824709-1824731
AGGCCAACTTTTCCCTTCCAGAGGCAATTA1824709GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATTCTGTCA
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:1747906-1747928
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1747906GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar Red Fuji chromosome 14.
CP147806.1:1842675-1842697
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1842675GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar Red Fuji chromosome 14.
CP147815.1:1914111-1914133
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1914111GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Malus ioensis cultivar PI590015 chromosome 12.
CP154735.1:1888787-1888809
AGGCCAACTTTTCCCTTCCAGAGGCAATTA1888787GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus ioensis cultivar PI590015 chromosome 12.
CP154752.1:1864136-1864158
AGGCCAACTTTTCCCTTCCAGAGGCAATTA1864136GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus coronaria cultivar PI590014 chromosome 12.
CP154769.1:1906738-1906760
AGGCCAACTTTTCCCTTCCAGAGGCAATTA1906738GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus coronaria cultivar PI590014 chromosome 14.
CP154771.1:1733574-1733596
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1733574GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Malus coronaria cultivar PI590014 chromosome 12.
CP154786.1:1888480-1888502
AGGCCAACTTTTCCCTTCCAGAGGCAATTA1888480GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus coronaria cultivar PI590014 chromosome 14.
CP154788.1:1778722-1778744
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1778722GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Chaenomeles sinensis isolate sampleA chromosome 17.
CP162380.1:1615642-1615664
AGGCCAACTTTTCCCTTCCAGAGGCAATCA1615642GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar WA 38 chromosome 12B.
CP165695.1:2185172-2185194
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2185172GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar WA 38 chromosome 14B.
CP165697.1:1938877-1938899
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1938877GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar WA 38 chromosome 12A.
CP165712.1:2361426-2361448
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2361426GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar WA 38 chromosome 14A.
CP165714.1:1938875-1938897
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1938875GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar Golden Delicious chromosome 12.
CP168776.1:2187277-2187299
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2187277GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar Golden Delicious chromosome 14.
CP168778.1:1723040-1723062
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1723040GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar Golden Delicious chromosome 12.
CP168793.1:2238738-2238760
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2238738GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus domestica cultivar Golden Delicious chromosome 14.
CP168795.1:1907276-1907298
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1907276GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:2114102-2114124
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2114102GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:1782662-1782684
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1782662GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 12.
OU696688.1:2164503-2164525
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2164503GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 14.
OU696690.1:1913760-1913782
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1913760GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 12.
OU744553.1:2166476-2166498
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2166476GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAAAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 14.
OU744555.1:1939720-1939742
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1939720GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 12.
OU744964.1:1926309-1926331
AGGCCAACTTTTCCCTTCCAGAGGCAATTA1926309GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 14.
OU744966.1:1875523-1875545
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1875523GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAGAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 12.
OU745002.1:2217375-2217397
AGGCCAACTTTTCCCTTCCAGAGGCAATTA2217375GCTCTGTGATGTCCTTACCCTTGACTTCGGAGAGCAGAAGTTGAATCCTGTCA
Malus domestica genome assembly, chromosome: 14.
OU745004.1:1874171-1874193
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1874171GCTCTGTGATGTCCTTACCCTTGACTTCGGACAGCAGAAGTTGAATCCTGTCA
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:440252-440274
AGGCCAACTTTGCCCTTCCGGAGGCAATTA440252GCTCTGTGATGTCCTTACCCTTGACTTTAGAAAGCAGAAGTTGACTCCCGTAC
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:1530081-1530103
AGGCCAACTTTTCCCTTCCGGAGGCAATTA1530081GCTCTGTGATGTCCTTACCCTTGACTTCGGAAAGCAAAAGTTGAATCCTGTCA
Mdfw2001o19.y1 Mdfw Malus domestica cDNA clone Mdfw2001o19 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CN444833.1:180-202
TGACAGGATTCAACTTCTGCTCTCCGAAGT180CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Mdfw2026m18.y1 Mdfw Malus domestica cDNA clone Mdfw2026m18 5' similar to SW:RLA2_PARAR P41099 60S ACIDIC RIBOSOMAL PROTEIN P2, mRNA sequence.
CN488436.1:214-236
TGACAGGATTCAACTTCTGCTCTCCGAAGT214CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGGTGGCCT
Mdfw2025h16.y1 Mdfw Malus domestica cDNA clone Mdfw2025h16 5' similar to SW:RLA2_PARAR P41099 60S ACIDIC RIBOSOMAL PROTEIN P2, mRNA sequence.
CN494720.1:191-213
TGACAGGATTCAACTTCTGCTCTCCGAAGT191CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Mdfw2030p01.y1 Mdfw Malus domestica cDNA clone Mdfw2030p01 5' similar to TR:Q9ZUX3 Q9ZUX3 PUTATIVE ACIDIC RIBOSOMAL PROTEIN, mRNA sequence.
CN580837.1:189-211
TGACAGGATTCAACTTCTGCTGTCCGAAGT189CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCT
000929AAFA007556HT (AAFA) Royal Gala apple skin peel, tree-ripened fruit 150 DAFB Malus domestica cDNA clone AAFA007556, mRNA sequence.
CN850790.1:72-94
TGACAGGATTCAACTTCTGCTCTCCGAAGT72CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
TSA: Pyrus communis mRNA, contig: lc795.
FX609382.1:255-277
TGACAGGATTCAACTTCTGCTTTCCGAAGT255CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCT
TSA: Pyrus communis mRNA, contig: lc1554.
FX610141.1:211-233
TGACAGGATTCAACTTCTGCTTTCCGAAGT211CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGCAGGGAAAAGTTGGCCT
TSA: Pyrus communis mRNA, contig: lc3785.
FX612372.1:193-215
TGACAGGATTCAACTCCTGCTCTCCGAAGT193CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
TSA: Pyrus communis mRNA, contig: lc8285.
FX616870.1:192-214
TGACAGGATTCAACTTCTGCTCTCCGAAGT192CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
TSA: Pyrus communis mRNA, contig: lc9272.
FX617857.1:162-184
TGACAGGATTCAACTTCTGCTTTCCGAAGT162CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:29502221-29502243
TGACAGGATTCAACTTCTGCTCTCCGAAGT29502221CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:28611246-28611268
TGACAGGATTCAACTTCTGCTTTCCGAAGT28611246CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:29680780-29680802
TGACAGGATTCAACTTCTGCTCTCCGAAGT29680780CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:30336815-30336837
TGACAGGATTCAACTTCTGCTTTCCGAAGT30336815CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:28876033-28876055
TGACAGGATTCAACTTCTGCTTTCCGAAGT28876033CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCT
Chaenomeles sinensis isolate sampleA chromosome 04.
CP162367.1:26379714-26379736
TGACAGGATTCAACTTCTGCTCTCCGAAGT26379714CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Chaenomeles sinensis isolate sampleA chromosome 08.
CP162371.1:48291623-48291645
TGACAGAATTCAACTTCTGCTTTCCGAAGT48291623CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTAGCCT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:29648032-29648054
TGACAGGATTCAACTTCTGCTCTCCGAAGT29648032CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:29220691-29220713
TGACAGGATTCAACTTCTGCTGTCCGAAGT29220691CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCT
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:31335722-31335744
TGACAGGATTCAACTTCTGCTTTCCGAAGT31335722CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:30556565-30556587
TGACAGGATTCAACTTCTGCTTTCCGAAGT30556565CAAGGGTAAGGACATCACAGAGCTAATTGCCTCCGGAAGGGAAAAGTTGGCCT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:43076430-43076452
TGACAGGATTCAACTTCTGCCTTCCGAAGT43076430CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:25581903-25581925
TGACAGGATTCAACTTCTGCTCTCCGAAGT25581903CAAGGGTAAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCT
Adonis annua genome assembly, chromosome: 13.
OZ123188.1:612799626-612799648
CAGCAAGATTGAATTGCTCCTATCCCAAAC612799626CAAGGGTAAGGACATCACAGAGCTCATTGCCTCAGGAAGGGAAAAGCTAGCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTCTGTGATGTCCTTACCCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCTGTGATGTCCTTACCCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.013 | 1.004 | search_plus_done; http://172.18.8.135:50800/match?q=GCTCTGTGATGTCCTTACCCTTG&k=0&no_gap=0&offset=0&limit=50
1.342 | 0.329 | search_minus_done; http://172.18.8.135:50800/match?q=CAAGGGTAAGGACATCACAGAGC&k=0&no_gap=0&offset=0&limit=5
1.358 | 0.016 | cgi_end;

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