GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:30:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

38RDBRM_UP_020_A06_01APR2004_048 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267273.1:76-95
TTCTCTTCTTTCTAGAGTTCGAATCTGTTT76GCTCTTATGGGATTTTGCTGCTGACAGAGAGAGAGAGAGAGAGAGCAATC
37RDBRH_UP_016_C01_01APR2004_011 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE523443.1:70-89
TTCTCTTCTTTCTAGAGTTCGAATCTGTTT70GCTCTTATGGGATTTTGCTGCTGACAGAGAGAGAGAGAGAGAGAGAGAGA
37RDBRH_UP_089_C03_23JAN2006_027 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
ES932779.1:76-95
TTCTCTTCTTTCTAGAGTTCGAATCTGTTT76GCTCTTATGGGATTTTGCTGCTGACAGAGAGAGAGAGAGAGAGAGCAATC
BR069120 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-07A08 5', mRNA sequence.
EX084476.1:34-53
GATGGCCGAGGGATCCTCTCCAATCTGTTT34GCTCTTATGGGATTTTGCTGCTGACAGAGACCCTTTATGAGAGAGAGAGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2678.
FX698228.1:42-61
CAAATCTTGATTCACTCTCCAAATCTGTTT42GCTCTTATGGGATTTTGCTGCTGACAGAGAGAGAGAGAGAGAGAGAGAGA
Brassica rapa subsp. pekinensis clone KBrH028G06, complete sequence.
CU695294.1:39944-39963
CAAATCTTGATTCACTCTCCAAATCTGTTT39944GCTCTTATGGGATTTTGCTGCTGACAGAGAGAGAGAGAGAGAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:1610743-1610762
TTCTCTTCTTTCTAGAGTTCGAATCTGTTT1610743GCTCTTATGGGATTTTGCTGCTGACAGAGAGAGAGAGAGAGAGAGAGCAA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 99 unordered pieces.
FJ789646.1:188464-188483
NNNNNNNNNNNNNNNNNNNNNNNNNGTCAG188464CAGCAAAATCCCATAAGAGCAAACAGATTTGGAGAGTGAATCAAGATTTG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 88 unordered pieces.
FJ789648.1:269972-269991
TCTCTCTCTCTCTCTCTCTCTCTCTGTCAG269972CAGCAAAATCCCATAAGAGCAAACAGATTCGAACTCTAGAAAGAAGAGAA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:27764851-27764870
TTGCTCTCTCTCTCTCTCTCTCTCTGTCAG27764851CAGCAAAATCCCATAAGAGCAAACAGATTCGAACTCTAGAAAGAAGAGAA
Habrosyne pyritoides genome assembly, chromosome: 25.
OU015610.1:2586839-2586858
TGTTTATGGTCGCATTTGGTTCGGTATTTT2586839CAGCAAAATCCCATAAGAGCTTCGTTCAACAAGCGGCCATCAACGATTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTCTTATGGGATTTTGCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCTTATGGGATTTTGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.754 | 0.745 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCTTATGGGATTTTGCTG&k=0&no_gap=0&offset=0&limit=50
0.890 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCAAAATCCCATAAGAGC&k=0&no_gap=0&offset=0&limit=43
0.893 | 0.003 | cgi_end;

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