GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:00:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Seladonia tumulorum genome assembly, chromosome: 3.
OU565268.1:14576548-14576566
GATCTAATTTTATTCTAGTAGTTTGGTTTC14576548GCTGAGATTGCAAGACCTTATTTCCATAAATTTGCTTATCGGGTGGAAG
Spisula solida genome assembly, chromosome: 5.
OX365948.1:32501000-32501018
GTAGTACTTTGTTTGGGGGTTTGCATCTTC32501000GCTGAGATTGCAAGACCTTTTGCTAAGGGGCACCATCTTGAGATGTACG
Spisula solida genome assembly, chromosome: 5.
OX365948.1:32555996-32556014
GTAGTACTTTGTTTGGGGGTTTGCATCTTC32555996GCTGAGATTGCAAGACCTTTTGCTAAGGGGCACCATCTTGAGATGTACG
Geotrypetes seraphini genome assembly, chromosome: 2.
LR699147.1:50445702-50445720
ACGCTCTGTGTTTCTTTGTTAAAGCCACCA50445702AAGGTCTTGCAATCTCAGCAAAATTGGGAATGTTATTTCTCACAAAACC
Raja brachyura genome assembly, chromosome: 45.
OY740826.1:78149-78167
GTAGTTGCCAGTTAATACACAAAAGATCAA78149AAGGTCTTGCAATCTCAGCAGGTGAGGCAGCATCGCTGGGGAAGATGGC
Sequence 42196 from Patent EP2761003.
JC656415.1:434-452
ACATGATGCATGATCATTGCTAGGTGAAGC434AAGGTCTTGCAATCTCAGCAGCTGTGGC
Sequence 42267 from Patent EP2761003.
JC656486.1:430-448
ACATGATGCATGATCATTGCTAGGTGAAGC430AAGGTCTTGCAATCTCAGCAGCTGTGGC
Manihot esculenta clone POYE308-11 starch branching enzyme I (sbeI) gene, partial cds.
HM046986.1:523-541
ACATGATGCATGATCATTGCTAGGTGAAGC523AAGGTCTTGCAATCTCAGCAGCTGTGGCAGATGAGAAGAAAACGATAAC
Manihot esculenta clone POYE308-12 starch branching enzyme I (sbeI) gene, partial cds.
HM046987.1:523-541
ACATGATGCATGATCATTGCTAGGTGAAGC523AAGGTCTTGCAATCTCAGCAGCTGTGGCAGATGAGAAGAAAACGATAAC
Manihot esculenta starch branching enzyme 1 (SBE1) mRNA, complete cds.
MK086025.1:203-221
CAAGAATCTCAATAGATAAGAGGGTGAAGC203AAGGTCTTGCAATCTCAGCAGCTGTGGCAGATGAGAAGAAAACGATAAC
M.esculenta SBE mRNA for starch branching enzyme.
X77012.1:256-274
CAAGAATCTCAATAGATAAGAGGGTGAAGC256AAGGTCTTGCAATCTCAGCAGCTGTGGCAGATGAGAAGAAAACGATAAC
Schrankia costaestrigalis genome assembly, chromosome: 23.
FR997848.1:13895044-13895062
CTGCAGGCGATGGACCCGCAGACGCTGATG13895044AAGGTCTTGCAATCTCAGCGTCTTCATCTTTATACTCGTCGTCCTGGAA
Mytilus edulis genome assembly, chromosome: 5.
OY782960.1:60491910-60491928
ATTTTTGATTGGCTTCAGTTAATTGGTGTA60491910AAGGTCTTGCAATCTCAGCAAATTTACATATAAAACGCCTATAATAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTGAGATTGCAAGACCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGAGATTGCAAGACCTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.294 | 0.285 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGAGATTGCAAGACCTT&k=0&no_gap=0&offset=0&limit=50
0.481 | 0.187 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGTCTTGCAATCTCAGC&k=0&no_gap=0&offset=0&limit=47
0.488 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).