GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-16 06:43:47, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acomys kempi genome assembly, chromosome: 11.
OU015365.1:21531850-21531869
TTGGGGTAAAGGACCTGCAGTGATGGATGT21531850GCTGAGTTATGGGGAAAGCAGGGAAAAATTAGCTCCTATCCACCATTTTG
Acomys dimidiatus genome assembly, chromosome: 12.
OU015385.1:28654465-28654484
TTGGGGTAAAGGACCTGCAGTGATGGATGT28654465GCTGAGTTATGGGGAAAGCAGGGAAAAATTAGCTCCTATCCACCATTTTG
Acomys percivali genome assembly, chromosome: 11.
OU015752.1:21316772-21316791
TTGGGGTAAAGGACCTGCAGTGATGGATAT21316772GCTGAGTTATGGGGAAAGCAGGGAAAAATTAGCTCCTATCCACCATTTTG
Cuc6_3_F04 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN910959.1:372-391
ATAAAGAAGCTTGAGAAATCTGGGAAACAT372GCTGAGTTATGGGGAAAGCAAATAAGTTCAAACAATATGAACAATTTCAA
EST1103447 Tam Dew mature fruit library Cucumis melo cDNA clone FR18C14, mRNA sequence.
DV634851.1:430-449
ATAAAGAAGCTTGAGAAATCTGGGAAACAT430GCTGAGTTATGGGGAAAGCAAATAAGTTCAAACAATATGAACAATTTCAA
EST11006450 CM-PEa library Cucumis melo cDNA clone PEa0002O20, mRNA sequence.
JG464737.1:495-514
ATAAAGAAGCTTGAGAAATCTGGGAAACAT495GCTGAGTTATGGGGAAAGCAAATAAGTTCAAACAATATGAACAATTTCAA
EST11016304 CM-TEa library Cucumis melo cDNA clone TEa0007F17, mRNA sequence.
JG474591.1:540-559
ATAAAGAAGCTTGAGAAATCTGGGAAACAT540GCTGAGTTATGGGGAAAGCAAATAAGTTCAAACAATATGAACAATTTCAA
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_2259, mRNA sequence.
JW920428.1:467-486
ATAAAGAAGCTTGAGAAATCTGGGAAACAT467GCTGAGTTATGGGGAAAGCAAATAAGTTCAAACAATATGAACAATTTCAA
Cucumis melo genomic scaffold, anchoredscaffold00087.
LN681930.1:580662-580681
ATAAAGAATCTTGAGAAATCTGGGAAACAT580662GCTGAGTTATGGGGAAAGCAAGTCCAAACAATATGAACAATTTCAAAAAT
Erithacus rubecula genome assembly, chromosome: 10.
LR812113.1:15600355-15600374
GCAGTTTGGAAGTGGAGCTGGCAAAACACA15600355GCTGAGTTATGGGGAAAGCACCATGGCAGTGTAACACAGCCAGTCTCAGG
Acomys russatus genome assembly, chromosome: 27.
LR877238.1:35780837-35780856
CAAAATGGTGGATAGGAGCTAATTTTTCCC35780837TGCTTTCCCCATAACTCAGCACATCCATCACTGCAGGTCCTTTACCCCAA
Acomys minous genome assembly, chromosome: 15.
OZ186489.1:35682062-35682081
CAAAATGGTGGATAGGAGCTAATTTTTCCC35682062TGCTTTCCCCATAACTCAGCACATCCATCACTGCAGGTCCTTTACCCCAA
Cucumis melo isolate PI 511890 chromosome 2.
CP136103.1:830469-830488
TTGAAATTGTTCATATTGTTTGAACTTATT830469TGCTTTCCCCATAACTCAGCATGTTTCCCAGATTTCTCAAGCTTCTTTAT
Cucumis melo isolate PI 511890 chromosome 12.
CP136108.1:14814101-14814120
ATTTTTGAAATTGTTCATATTGTTTGGACT14814101TGCTTTCCCCATAACTCAGCATGTTTCCCAGATTTCTCAAGATTCTTTAT
Cucumis melo genomic scaffold, anchoredscaffold00025.
LN681806.1:826933-826952
TTGAAATTGTTCATATTGTTTGAACTTATT826933TGCTTTCCCCATAACTCAGCATGTTTCCCAGATTTCTCAAGCTTCTTTAT
Cucumis melo genomic chromosome, chr_2.
LN713256.1:826933-826952
TTGAAATTGTTCATATTGTTTGAACTTATT826933TGCTTTCCCCATAACTCAGCATGTTTCCCAGATTTCTCAAGCTTCTTTAT
Cucumis melo genomic chromosome, chr_12.
LN713266.1:14608017-14608036
ATTTTTGAAATTGTTCATATTGTTTGGACT14608017TGCTTTCCCCATAACTCAGCATGTTTCCCAGATTTCTCAAGATTCTTTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTGAGTTATGGGGAAAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGAGTTATGGGGAAAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.173 | 1.164 | search_plus_done; http://172.18.8.135:50800/match?q=GCTGAGTTATGGGGAAAGCA&k=0&no_gap=0&offset=0&limit=50
1.668 | 0.495 | search_minus_done; http://172.18.8.135:50800/match?q=TGCTTTCCCCATAACTCAGC&k=0&no_gap=0&offset=0&limit=40
1.672 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).