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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-11 23:19:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Citrus reticulata microsatellite DNA, locus mCrCIR07D07, allele 07D07-ga(10).
AM489748.1:6-25
TGTGT6GCTGATGATACGCACGAACCCATGTCTCTAAATTCTCTTTATTTAAATTG
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:10126231-10126250
GCAGCGGCTGAGTCTGCTGTTCTCTTGTGT10126231GCTGATGATACGCACGAACCCATGTCTCTAAATTCTCTTTATTTAAATTG
UCRCR01_05E21_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05E21, mRNA sequence.
CF830755.1:115-134
CAATTTAAATAAAGAGAATTTAGAGACATG115GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CGF1004751_G12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_G12 5', mRNA sequence.
CK939334.1:159-178
CAATTTAAATAAAGAGAATTTAGAGACATG159GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
UCRCS06_0005N14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005N14, mRNA sequence.
CN191796.1:158-177
CAATTTAAATAAAGAGAATTTAGAGACATG158GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
C16014G02SK ExocortL1 Citrus medica cDNA clone C16014G02, mRNA sequence.
CX304697.1:134-153
CAATTTAAATAAAGAGAATTTAGAGACATG134GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
Citrus nobilis x Citrus kinokuni mRNA, clone: EGJ_0312, 5'-end sequence, expressed in ovule.
DC886687.1:94-113
CAATTTAAATAAAGAGAATTTAGAGACATG94GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
Citrus unshiu mRNA, clone: MWYBO21, 5'-end sequence, expressed in whole fruit.
DC894647.1:66-85
CAATTTAAATAAAGAGAATTTAGAGACATG66GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
UCRCS11_02B20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B20, mRNA sequence.
DN618104.1:112-131
CAATTTAAATAAAGAGAATTTAGAGACATG112GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
UCRCS11_04P17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0004P17, mRNA sequence.
DN620199.1:89-108
CAATTTAAATAAAGAGAATTTAGAGACATG89GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
UCRCS11_05K16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005K16, mRNA sequence.
DN620679.1:98-117
CAATTTAAATAAAGAGAATTTAGAGACATG98GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
USDA-FP/ARO_14089 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-09_F03 5', mRNA sequence.
DN958259.1:155-174
CAATTTAAATAAAGAGAATTTAGAGACATG155GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAI1BG09FM2 AbsDev1 Citrus clementina cDNA 5', mRNA sequence.
DY258379.1:116-135
CAATTTAAATAAAGAGAATTTAGAGACATG116GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAI1CG03FM2 AbsDev1 Citrus clementina cDNA 5', mRNA sequence.
DY258420.1:145-164
CAATTTAAATAAAGAGAATTTAGAGACATG145GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAP1YA21FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY260926.1:79-98
CAATTTAAATAAAGAGAATTTAGAGACATG79GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAP9YH16FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY271289.1:96-115
CAATTTAAATAAAGAGAATTTAGAGACATG96GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS00-C1-102-079-D09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY670794.1:74-93
CAATTTAAATAAAGAGAATTTAGAGACATG74GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS00-C1-102-004-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY673930.1:102-121
CAATTTAAATAAAGAGAATTTAGAGACATG102GGTTCGTGCGTATCATCAGCACACAAGAGAACAACAGACTCAGCCGCTGC
CS00-C3-700-041-E04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695903.1:179-198
CAATTTAAATAAAGAGAATTTAGAGACATG179GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS00-C3-700-051-E04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY696793.1:104-123
CAATTTAAATAAAGAGAATTTAGAGACATG104GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS00-C3-701-052-F08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY706112.1:174-193
CAATTTAAATAAAGAGAATTTAGAGACATG174GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS00-C3-701-059-H05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY706656.1:16-35
CCACGCGTCCGCATG16GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS00-C3-705-045-E08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY738610.1:165-184
CAATTTAAATAAAGAGAATTTAGAGACATG165GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS12-C1-001-004-G08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY753606.1:181-200
CAATTTAAATAAAGAGAATTTAGAGACATG181GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS12-C1-001-006-C03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY753731.1:182-201
CAATTTAAATAAATATTATTTAGAGACATG182GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS12-C1-001-007-G05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY753861.1:182-201
CAATTTAAATAAAGAGAATTTAGAGACATG182GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CS12-C1-001-013-H01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY754370.1:172-191
CAATTTAAATAAAGAGAATTTAGAGACATG172GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
CR05-C1-102-053-A01-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY770876.1:155-174
CAATTTAAATAAAGAGAATTTAGAGACATG155GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
PT11-C1-900-063-E09-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY815599.1:42-61
CAATTTAAATAAAGAGAATTTAGAGACATG42GGTTCGTGCGTATCATCAGCACACNAGAGAACAGCAGACTCAGCCGCTGC
PT11-C1-900-096-E02-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY818558.1:136-155
CAATTTAAATAAAGAGAATTTAGAGACATG136GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAI1BG09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG09, mRNA sequence.
FC873360.1:116-135
CAATTTAAATAAAGAGAATTTAGAGACATG116GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAI1CG03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG03, mRNA sequence.
FC873514.1:143-162
CAATTTAAATAAAGAGAATTTAGAGACATG143GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAP9YH16FM1 TF Citrus clementina cDNA clone KN0AAP9YH16, mRNA sequence.
FC927804.1:96-115
CAATTTAAATAAAGAGAATTTAGAGACATG96GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
KN0AAP1YA21FM1 TF Citrus clementina cDNA clone KN0AAP1YA21, mRNA sequence.
FC928392.1:79-98
CAATTTAAATAAAGAGAATTTAGAGACATG79GGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGC
C34203A05EF PostHarveN Citrus clementina cDNA clone C34203A05, mRNA sequence.
FC931958.1:158-177
CAATTTAAATAAAGAGAATTTAGAGACATG158GGTTCGTGCGTATCATCAGCACACAGAGAACAGCAGACTCAGCCGCTGCC
Dicrocoelium dendriticum genome assembly, chromosome: 10.
OX104059.1:62946044-62946063
AGCTAAGACGGTCTTTAGCAAGATCGATCT62946044GGTTCGTGCGTATCATCAGCTACCTGTCGAGGAAGCTAATATAACTAAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTGATGATACGCACGAACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGATGATACGCACGAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.168 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGATGATACGCACGAACC&k=0&no_gap=0&offset=0&limit=50
1.994 | 1.826 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTCGTGCGTATCATCAGC&k=0&no_gap=0&offset=0&limit=48
2.017 | 0.023 | cgi_end;

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