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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:36:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Hyperoodon ampullatus genome assembly, chromosome: 1.
OX457056.1:216050586-216050603
CTTTGGCTCAGCTCCAAGGAGAATGTAACT216050586GCTGCCACACTCGTCTCCCACTGTGTGTGGGGGTGTCCCCCAGGAATG
Pipistrellus pygmaeus genome assembly, chromosome: 18.
OX465320.1:39304826-39304843
GCACAGCTTCATCCTGGCACCAGCGTCGGC39304826GCTGCCACACTCGTCTCCTGATTTGTCGAGTCCCAGCAGAGAGCAAGA
Myotis daubentonii genome assembly, chromosome: 2.
OY725360.1:4526684-4526701
GTTTCAAGGGAACTATTTTCCCGACCCCTA4526684GCTGCCACACTCGTCTCCCACAAATAGGCTCTCTAATTCCCTTTAAAG
Poecilia reticulata genome assembly, chromosome: 18.
LR880662.1:13663537-13663554
TTTCATCACTCTATCTCAGCCTCATTGTAC13663537GCTGCCACACTCGTCTCCATGGAGACCGCTCTGAGGCTGGTTGTTGCT
Ammodytes marinus genome assembly, chromosome: 23.
OX465167.1:8734602-8734619
TTTCATCACTCTCTCTCACCCTCATTGTAC8734602GCTGCCACACTCGTCTCCATGGGAACCGCTCTGGGACTGGGTGTTGTT
Valencia hispanica genome assembly, chromosome: 15.
OY747714.1:25866952-25866969
TTTCATCACTCTATCTCAGCCTCATTGTAC25866952GCTGCCACACTCGTCTCCATGGGAACCGTTCTGGGACTGGTTTGTTGC
MAG: Narnaviridae sp. isolate 278R-k141_591578 RNA dependent RNA polymerase gene, partial cds.
ON164308.1:859-876
AGTTTTCCCGTTCTCTGTTTAGTTAACATG859GCTGCCACACTCGTCTCCTTCAACCGCGCTCTTAAGCGCCAACATCAG
Alcanivorax borkumensis SK2, complete genome.
AM286690.1:2880137-2880154
GCTGGCCACTTCTTCTGCCGGAGCTGCAGC2880137GCTGCCACACTCGTCTCCTTCTACACACACAGAGCCCACCGGCTTGAT
Alcanivorax sp. NBRC 101098 DNA, complete genome.
AP014613.1:2849587-2849604
GCTGGCCACTTCTTCTGCCGGAGCTGCAGC2849587GCTGCCACACTCGTCTCCTTCTACACACACAGAGCCCACCGGCTTGAT
Amblyteles armatorius genome assembly, chromosome: 3.
OW121688.1:19195822-19195839
CTTTATCTTTATAATACGTCTGAACTGCTC19195822GCTGCCACACTCGTCTCCACTATTTCGTTGAAAAATAACAGTTTATGG
Drosophila phalerata genome assembly, chromosome: 1.
OX596004.2:33561502-33561519
ACGGAGGCAAATCAATCGGCGCCTAGCGTT33561502GCTGCCACACTCGTCTCCGAGCTTGTGCCCGCCATGGAAGCCTCAATG
Rhorus exstirpatorius genome assembly, chromosome: 1.
OY751313.1:25853532-25853549
CGAGTGCTCTCCCAACTGAGCTATCCAGCC25853532GCTGCCACACTCGTCTCCGAATCGTCCTCATACCGTGCTACAATATTT
Rhorus exstirpatorius genome assembly, chromosome: 2.
OY751314.1:6190330-6190347
CGAGTGCTCTCCCAACTGAGCTATCCAGCC6190330GCTGCCACACTCGTCTCCGAATCGTCCTCATACCATGTTACAAAGTAT
Rhorus exstirpatorius genome assembly, chromosome: 5.
OY751317.1:4220351-4220368
GGAAGAGGTACCCAACTGAGCTATCCCGCC4220351GCTGCCACACTCGTCTCCGAATTGTCCTCATACCGTGTTACAATCCCC
Rhorus exstirpatorius genome assembly, chromosome: 6.
OY751318.1:6492055-6492072
CGAGTGCTCTCCCAACTGAGCTATCCAGCC6492055GCTGCCACACTCGTCTCCGAATCGTCCTCATACCGTGTTACAACGTAT
Gortyna flavago genome assembly, chromosome: 1.
OY770126.1:14587210-14587227
AAAGCTAAAATAAACTAAAATTGTGTTACC14587210GCTGCCACACTCGTCTCCAAACGCTTGATACAAGTGGCACTTGTGTAG
Balaenoptera acutorostrata genome assembly, chromosome: 16.
OX465366.1:13654820-13654837
CCATTCCTGGGGGACACCCCACACACAGTG13654820GGAGACGAGTGTGGCAGCAGTTACATTCTCCTTGGAGCTGAGCCAAAG
Plecotus auritus genome assembly, chromosome: 3.
OY734024.1:223228916-223228933
CTTTAAGGGGAATTAGAGAGCCTAATGGTA223228916GGAGACGAGTGTGGCAGCTACGGGTCGGGAAAATAGTTCCCTTGAAAC
Pipistrellus nathusii genome assembly, chromosome: 18.
OY882875.1:3355227-3355244
TCCTGCTCTCTGCTGGGACTTGACAAATTA3355227GGAGACGAGTGTGGCAGCGCTGACGCTGGTGCCAGGATGAAGCTGTGC
Gallus gallus breed Huxu chromosome 13.
CP100567.1:11482893-11482910
AGAAGAGCTCAGAGTGCAGCAAGGGGTGGG11482893GGAGACGAGTGTGGCAGCCCCCAGACAACCAAATGTGGATGAACTGTT
Podarcis lilfordi genome assembly, chromosome: 16.
OX395143.1:3749586-3749603
CCAGGGCAGAATCATCCCGATAAGACCCCT3749586GGAGACGAGTGTGGCAGCAGGGGTGGAAGGGGTGGTTTTTAGCAGCTG
Hyperoplus immaculatus genome assembly, chromosome: 23.
OX442371.1:11646589-11646606
AACAACACCCAGTCCCAGAGCGGTTCCCAT11646589GGAGACGAGTGTGGCAGCGTACAATGAGGGTGAGAGAGAGTGATGAAA
Podarcis cretensis genome assembly, chromosome: 16.
OX638165.1:43145223-43145240
CCAGGGCAGAATCATCCCGATAAGACCCCT43145223GGAGACGAGTGTGGCAGCAGGGGTGGAAGGGGTGGTTTTTAGCAGCTG
Sequence 59 from patent US 11140883.
MY565840.1:26-43
GTCTTACCAACATCTCCATCACCGT26GGAGACGAGTGTGGCAGCTGCATCACTG
Porphyra yezoensis cDNA, clone:PFL037a11_r, 5'end.
AU192872.1:97-114
CTGTATAGCGGCGGCGTGCGCCATGGACGC97GGAGACGAGTGTGGCAGCGGCGGCGGTGGGTGTTCGTGCCGACCCGTC
Spirosoma pollinicola strain Ha7 chromosome, complete genome.
CP025096.1:627975-627992
CTGGGCCATGAGCGATAGTATGAAAGCGCT627975GGAGACGAGTGTGGCAGCTTGGCGTATGGCCCTCACAAATAGAGCAAT
Sphingomonas profundi strain LMO-1 chromosome, complete genome.
CP046535.1:834103-834120
TTCAAGGCTCTAACAGCGCCTTAGCTTCCA834103GGAGACGAGTGTGGCAGCCGACAGCACCTATCAGACGATCACCGGCGA
Hoplodrina ambigua genome assembly, chromosome: 26.
OX458990.1:112550-112567
TTCCGATTATTCATTGATTCGTTCCGATGT112550GGAGACGAGTGTGGCAGCCCTGTCGTCACGGTAATGTGTTTGACACAG
Rhorus exstirpatorius genome assembly, chromosome: 2.
OY751314.1:9155007-9155024
ATATATTGTAACACGGTATGAGGACGATTC9155007GGAGACGAGTGTGGCAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAG
Rhorus exstirpatorius genome assembly, chromosome: 2.
OY751314.1:12052569-12052586
ATGCATTGTAACACGGTATGAGGACGATTC12052569GGAGACGAGTGTGGCAGCGGCTGGATAGCTCAGTTGGGAGAGCACTCG
Rhorus exstirpatorius genome assembly, chromosome: 2.
OY751314.1:12053020-12053037
AGGGGATTGTACACGGTATGAGGACGATTC12053020GGAGACGAGTGTGGCAGCGGCTGGATAGCTCAGTTGGGAGAGCACTCA
Rhorus exstirpatorius genome assembly, chromosome: 2.
OY751314.1:14249270-14249287
ATATATTGTAACACGGTATGAGGACGATTC14249270GGAGACGAGTGTGGCAGCGGCTGGATAGCTCAGTTGGGAGAGCACTCA
Rhorus exstirpatorius genome assembly, chromosome: 3.
OY751315.1:7371860-7371877
GGGGATTGTAACACGGTATGAGGACGATTC7371860GGAGACGAGTGTGGCAGCGGCTGGATAGCTCAGTTGCGAGAGCACTTG
Rhorus exstirpatorius genome assembly, chromosome: 3.
OY751315.1:10842667-10842684
ATATATTGTAACACGGTATGAGGACGATTC10842667GGAGACGAGTGTGGCAGCGGCTGGTTTGCTCAGTTGGGAGAGCACTCG
Rhorus exstirpatorius genome assembly, chromosome: 3.
OY751315.1:10843119-10843136
GGGGATTGTAACACTGTATGAGGACGATTC10843119GGAGACGAGTGTGGCAGCGGCTGGATAGCTCAGTTGGGAGAGCACTCG
Rhorus exstirpatorius genome assembly, chromosome: 4.
OY751316.1:6122972-6122989
ATATATTGTAACACGGTATGAAGATGATTC6122972GGAGACGAGTGTGGCAGCGGCTGAATAGCTCAGTTGGGAGAGCACTCG
Rhorus exstirpatorius genome assembly, chromosome: 9.
OY751321.1:5640210-5640227
GGGGATTGTAACACGGTATGAGGACGATTC5640210GGAGACGAGTGTGGCAGCGGCTGGATAGCTCAGTTGGGAGAGCACTCA
Rhorus exstirpatorius genome assembly, chromosome: 9.
OY751321.1:5641858-5641875
GGGGATTGTAACACGGTATGAGGACGATTC5641858GGAGACGAGTGTGGCAGCGGCTGGATAGCTCAGTTGGGAGAGCACTCG
Helleia helle genome assembly, chromosome: 16.
OY971430.1:12737402-12737419
ACTGACCCAGGCCGGACGTCACGCCTGAGA12737402GGAGACGAGTGTGGCAGCCGGGCGGCACACGCTGTAGGGCGCTCCGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTGCCACACTCGTCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGCCACACTCGTCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.209 | 0.200 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGCCACACTCGTCTCC&k=0&no_gap=0&offset=0&limit=50
0.404 | 0.195 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGACGAGTGTGGCAGC&k=0&no_gap=0&offset=0&limit=34
0.419 | 0.015 | cgi_end;

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