GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pipistrellus pipistrellus genome assembly, chromosome: 15.
LR862371.1:4399541-4399560
CCTCTTCCTTGTCTCCTGGGTGCTGCTGCT4399541GCTGCTGCTGCTTCTAGGTTTTGACACTCTTTTCTTTCAAAACCATCCAG
Bos taurus genome assembly, chromosome: 20.
LR962751.1:9654645-9654664
AACAGGCTTAGTTGCCCTGCTGCTGCTGCT9654645GCTGCTGCTGCTTCTAGGTTGCTTTAGTCGTGTCCGACTCTGTATGACCC
Bos gaurus x Bos taurus genome assembly, chromosome: 20.
OX258974.1:9707063-9707082
TACAGGCTTAGTTGCCCTGCTGCTGCTGCT9707063GCTGCTGCTGCTTCTAGGTTGCTTTAGTCGTGTCCGACTCTGTATGACCC
Bos taurus strain mammals genome assembly, chromosome: 20.
OX344709.1:9738909-9738928
TACAGGCTTAGTTGCCCTGCTGCTGCTGCT9738909GCTGCTGCTGCTTCTAGGTTGCTTTAGTCGTGTCCGACTCTGTATGACCC
Sylvilagus floridanus genome assembly, chromosome: 19.
OX463241.1:88631435-88631454
ATTTGAAGTGTAAAAGGCTTCCATAATGAC88631435GCTGCTGCTGCTTCTAGGTTTGTCAGCCCCGGTGCCGAGGGGAAGGAAGG
Pipistrellus pygmaeus genome assembly, chromosome: 17.
OX465319.1:5551479-5551498
AACAGTCCTCTTCCTTGTCTCCTGGGTGCT5551479GCTGCTGCTGCTTCTAGGTTTTTGACACTCTTTTCTTTCAAAACCATCCA
Pipistrellus nathusii genome assembly, chromosome: 2.
OY883179.1:9594846-9594865
TGGCCTCTGGTAAGTAATGCTCTCCCTGCT9594846GCTGCTGCTGCTTCTAGGTTTAACATGGACATAGTAACCTCATCCACCTC
Bos taurus genome assembly, chromosome: Bta20.
OY997248.1:13124352-13124371
TACAGGCTTAGTTGCCCTGCTGCTGCTGCT13124352GCTGCTGCTGCTTCTAGGTTGCTTTAGTCGTGTCCGACTCTGTATGACCC
Microcaecilia unicolor genome assembly, chromosome: 2.
LR594633.1:520342712-520342731
TTTATTGCATTTGCTTGCTGCTGTGCTGCT520342712GCTGCTGCTGCTTCTAGGTTAGTAGGAGCAGCATGGGGGGGGGGGGGTCA
Melanostigma gelatinosum genome assembly, chromosome: 8.
OX456505.1:8271518-8271537
TTTGTACCTGCAGTGTCCTGCTGTGACTTT8271518GCTGCTGCTGCTTCTAGGTTTCATTGAGCCGTTCTCTTCTCTCTCCTCCA
Mddb5005o01.y1 Mddb Malus domestica cDNA clone Mddb5005o01 5' similar to TR:Q40969 Q40969 PUTATIVE MADS-BOX FAMILY TRANSCRIPTION FACTOR, mRNA sequence.
CO866780.1:25-44
CTCCTCTGGTTTTCCTTCGAATTC25GCTGCTGCTGCTTCTAGGTTAGGGCTCTACTCTCGCTCCCGGAAACTAGA
Mdst6024k12.y4 Mdst Malus domestica cDNA clone Mdst6024k12 5' similar to TR:Q9ST53 Q9ST53 MADS-BOX PROTEIN 4, mRNA sequence.
CV997815.1:49-68
AAACCCCTCCTCTGGTTTTCTTTCGAATTC49GCTGCTGCTGCTTCTAGGTTAGGGCTCTACTCTCGCTCCCGGAAACTAGA
010719ABAA002375HT (ABAA) Pacific Rose spur buds from ON trees Malus domestica cDNA clone ABAA002375, mRNA sequence.
EB140370.1:26-45
GCTCCTCTGGTTTTCTTTCGAATTC26GCTGCTGCTGCTTCTAGGTTAGGGCTCTACTCTCGCTCCCGGAAACTAGA
TSA: Pyrus pyrifolia mRNA, contig: contig_26198.
FX434424.1:95-114
GAAACCCCTCATTTGGTTGTCTTTCGATTC95GCTGCTGCTGCTTCTAGGTTAGGGTTTTACAGTCGCTCCCGGAAACTAGA
TSA: Pyrus x bretschneideri Unigene18139_XinShao mRNA sequence.
JR612888.1:508-527
TTTCTTTATTTAGCTGTCGAATTCGCTGCT508GCTGCTGCTGCTTCTAGGTTAGGGGTTTACATTTGGCTCCCGGGA
Pyrus pyrifolia var. culta FLC mRNA for flowering locus C-like protein, complete cds.
AB524589.1:35-54
GAAACCCCTCATTTGGTTGTCTTTCGATTC35GCTGCTGCTGCTTCTAGGTTAGGGTTTTACAGTCGCTCCCGGAAACTAGA
Tetradesmus obliquus strain DOE0152z chromosome 4a.
CP126194.1:4869233-4869252
GCGCCACCCGTGCATCTCCAAATCGCACCT4869233GCTGCTGCTGCTTCTAGGTTGAACGACGCTGCTGCTGACGAGCAGCGCAA
Tetradesmus obliquus strain DOE0152z chromosome 6a.
CP126196.1:4690102-4690121
GCAGCTCCAGATGGCGCCTTGGCCCCTGCT4690102GCTGCTGCTGCTTCTAGGTTTACAGCCAGCCAGGCTGCCGCCTCCCCACA
Tetradesmus obliquus strain DOE0152z chromosome 6a.
CP126196.1:4695642-4695661
GCAGCAGCAGCTCCTGCTGCTGATGCCGCT4695642GCTGCTGCTGCTTCTAGGTTTGCAGCCAGCCAGGCAGCCGCCTCCCCACA
Tetradesmus obliquus strain DOE0152z chromosome 6b.
CP126213.1:5225821-5225840
GCAGCAGCAGCTCCTGCTGCTGATGCCGCT5225821GCTGCTGCTGCTTCTAGGTTTGCAGCCAGCCAGGCAGCCGCCTCCCCACA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:3571431-3571450
AAACCCCTCCTCTGGTTTTCCTTCGAATTC3571431GCTGCTGCTGCTTCTAGGTTAGGGCTCTACTCTCGCTCCCGGAAACTAGA
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:585465-585484
TTCTTTCATTATTTAGATGTCGAATTCGCT585465GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTCGGCTCCCGGAAACTAG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:558082-558101
TTCTTTCATTATTTAGATGTCGAATTCGCT558082GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTCGGCTCCCGGAAACTAG
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:659579-659598
TTCTTTCATTATTTAGGTGTCGAATTCGCT659579GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTTGGCTCCCGGAAACTAG
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:650742-650761
TTCTTTCATTATTTAGGTGTCGAATTCGCT650742GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTTGGCTCCCGGAAACTAG
Malus domestica genome assembly, chromosome: 17.
OU696693.1:654597-654616
TTCTTTCATTATTTAGGTGTCGAATTCGCT654597GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTTGGCTCCCGGAAACTAG
Malus domestica genome assembly, chromosome: 17.
OU744558.1:633647-633666
TTTCATTATTTAGGTGTCGAATTCGCTGCT633647GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTTGGCTCCCGGAAACTAG
Malus domestica genome assembly, chromosome: 17.
OU744969.1:651267-651286
TTCTTTCATTATTTAGGTGTCGAATTCGCT651267GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTTGGCTCCCGGAAACTAG
Malus domestica genome assembly, chromosome: 17.
OU745007.1:652514-652533
TTCTTTCATTATTTAGGTGTCGAATTCGCT652514GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTTGGCTCCCGGAAACTAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX638874.1:296721731-296721750
AGACGGACGGCAAAGAGCCTATATGGGCCA296721731GCTGCTGCTGCTTCTAGGTTGCACAGCTGGGTGCCACGTGGAACCTTTGC
Pseudopediastrum boryanum genome assembly, chromosome: 17.
OY744509.1:2111378-2111397
GCTGCTTCTACTCCTGCTCGTACTCTTCGT2111378GCTGCTGCTGCTTCTAGGTTGCTAGTGGTGTGTTTGTGAACCGTGACCGT
Berberis vulgaris genome assembly, chromosome: 4.
OY747127.1:78546859-78546878
CTTCTGTGTCTCGCTCGGTCTTTGTTGTAG78546859GCTGCTGCTGCTTCTAGGTTGCCCATGGTTGCTGGTATTGAAGGTCTTGC
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:697431-697450
TCTTTCTTTCTTTATTCAGCTGTCGAATTC697431GCTGCTGCTGCTTCTAGGTTAGGGTTTTACATTTGGCTCCCGGAAACTAG
1_Tdi_b3v08.
OA683988.1:275-294
ATACTCCCGCTCTTGGTGTTTACTTGCACA275GCTGCTGCTGCTTCTAGGTTTTGAAGGTTATTGTAATTGTGGCTGTAGTG
2_Tsi_b3v08.
OC003892.1:16622-16641
TAGAATATACTGATTTTTATGTTGACTTTA16622GCTGCTGCTGCTTCTAGGTTTTGTAGATTTTGATTGTGGTGATGGTATTG
1_Tps_b3v08.
OD245528.1:271-290
ATACTCCCGCTCTTGGTGTTTACTTGCACA271GCTGCTGCTGCTTCTAGGTTTTGAAGGTTATTGTAATTGTGGCTGTAGTG
4_Tte_b3v08.
OE000587.1:174658-174677
ATACTCCCGCTTTTTGTGTTAACTTTTACT174658GCTGCTGCTGCTTCTAGGTTTTGTAGATTATGGTAGTGATGCCGGTTATG
2_Tcm_b3v08.
OE182625.1:17258-17277
TAGAATATACTGATTTTTATGTTGACTTTA17258GCTGCTGCTGCTTCTAGGTTTTGTAGATTTTGATTGTGGTGATGGTATTG
2_Tcm_b3v08.
OE190197.1:1599-1618
AAGATACTCCCGCTTTTGGTATTCACTTGC1599GCTGCTGCTGCTTCTAGGTTTTGGAGTTTAATGTAGTTGTGCTGGTAGTG
5_Tge_b3v08.
OE843244.1:29509-29528
ATACTCCCGCTTTGTGTGTTTACTTTTACT29509GCTGCTGCTGCTTCTAGGTTCTGTAGATAATGGTAGTGATGACGGTAATG
Melangyna quadrimaculata genome assembly, chromosome: 3.
OX439485.1:163974655-163974674
GTCACTTGCTTCCTGCCGCGCCACCATGCT163974655GCTGCTGCTGCTTCTAGGTTTATGTTTCTCCAGATGCCCGCGCGCGTCTT
Tetheella fluctuosa genome assembly, chromosome: W.
OX578220.1:6503196-6503215
GGCCGTACACCAAACCTATCCCGATACAAT6503196GCTGCTGCTGCTTCTAGGTTGAAGCTGCTGTCCTCGTAGCACAAAACCAT
Cepaea hortensis genome assembly, chromosome: 2.
OY992877.1:126611341-126611360
CCCCCTTTCATGTATCCTAATGTTTTGCAA126611341GCTGCTGCTGCTTCTAGGTTTGTAAAGTTGTCTCTGCAGAAAACATGTGG
Muscardinus avellanarius genome assembly, chromosome: 19.
OY726576.1:7692254-7692273
ACTGCCAAACAAAACAAAACAAAACAAAAC7692254AACCTAGAAGCAGCAGCAGCAGCAGCGGCGGCAGCATAGTAACTCAAAAT
Capricornis sumatraensis isolate serow.1 chromosome 15.
CP135641.1:13222233-13222252
GGGTCACACAGAATCAGACACGACTGAAGC13222233AACCTAGAAGCAGCAGCAGCAGCAGTATTTCATTCAGGAGACCCCCAGTT
Bos taurus genome assembly, chromosome: 20.
LR962876.1:61929631-61929650
GGGTCATACAGAGTCGGACACGACTAAAGC61929631AACCTAGAAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAACTAAGCCTGTA
Pipistrellus pygmaeus genome assembly, chromosome: 2.
OX465303.1:190689586-190689605
GAGGTGGATGAGGTTACTATGTCCATGTTA190689586AACCTAGAAGCAGCAGCAGCAGAGAGAACATTACTTACCAGAGGCCACAT
Pipistrellus nathusii genome assembly, chromosome: 17.
OY882874.1:42900546-42900565
CTGGATGGTTTTGAAAGAAAAGAATGTCAA42900546AACCTAGAAGCAGCAGCAGCACCCAGGAGACAAGGAAGAGGACTGTTTGT
Pipistrellus nathusii genome assembly, chromosome: 17.
OY883194.1:42998572-42998591
CTGGATGGTTTTGAAAGAAAAGAATGTCAA42998572AACCTAGAAGCAGCAGCAGCACCCAGGAGACAAGGAAGAGGACTGTTTGT
TSA: Scophthalmus maximus Pmax_rep_c54291 mRNA sequence.
JU398338.1:438-457
AAAACCAGTCGGACCGCCGACCAACAGCAG438AACCTAGAAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCCCCAGATAA
Bos taurus clone CH240-53E16, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC158075.3:168955-168974
GGGTCATACAGAGTCGGACACGACTAAAGC168955AACCTAGAAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAACTAAGCCTGTA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:5464486-5464505
TCTAGTTTCCTGGAGCGAGAGTAGAGCCCT5464486AACCTAGAAGCAGCAGCAGCGAATTCGAAGGAAAACCAGAGGAGGGGTTT
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:33420937-33420956
CTAGTTTCCGGGAGCCGAATGTAAAACCCT33420937AACCTAGAAGCAGCAGCAGCAGCGAATTCGACATCTAAATAATGAAAGAA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:5033941-5033960
TCTAGTTTCCGGGAGCGAGAGTAGAGCCCT5033941AACCTAGAAGCAGCAGCAGCGAATTCGAAGGAAAACCAGAGGAGGGGTTT
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:34252032-34252051
CTAGTTTCCGGGAGCCAAATGTAAAACCCT34252032AACCTAGAAGCAGCAGCAGCAGCGAATTCGACACCTAAATAATGAAAGAA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:5227433-5227452
TCTAGTTTCCGGGAGCGAGAGTAGAGCCCT5227433AACCTAGAAGCAGCAGCAGCGAATTCGAAAGAAAACCAGAGGAGGGGTTT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:5317724-5317743
TCTTGTTTCTCTCTCTAGTTTCCGGGAGCG5317724AACCTAGAAGCAGCAGCAGCGAATTCGAAAGAAAACCAGAGGAGGGGTTT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:5281660-5281679
TCTAGTTTCCGGGAGCGAGAGTAGAGCCCT5281660AACCTAGAAGCAGCAGCAGCGAATTCGAAAAGGAAAACCAGAGGAGGGGT
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:4970878-4970897
TCTAGTTTCCGGGAGCGAGAGTAGAGCCCT4970878AACCTAGAAGCAGCAGCAGCGAATTCGAAGGAAAACCAGAGGAGGGGTTT
Malus domestica genome assembly, chromosome: 10.
OU696686.1:5367874-5367893
TCTTGTTTCTCTCTCTAGTTTCCGGGAGCG5367874AACCTAGAAGCAGCAGCAGCGAATTCGAAAGAAAACCAGAGGAGGGGTTT
Malus domestica genome assembly, chromosome: 10.
OU744551.1:5207405-5207424
TCTAGTTTCCGGGAGCGAGAGTAGAGCCCT5207405AACCTAGAAGCAGCAGCAGCGAATTCGAAGGAAAACCAGAGGAGGGGTTT
Malus domestica genome assembly, chromosome: 10.
OU744962.1:5138833-5138852
TCTAGTTTCCGGGAGCGAGAGTAGAGCCCT5138833AACCTAGAAGCAGCAGCAGCGAATTCGAAGGAAAACCAGAGGAGGGGTTT
Malus domestica genome assembly, chromosome: 10.
OU745000.1:4745072-4745091
TCTAGTTTCCGGGAGCGAGAGTAGAGCCCT4745072AACCTAGAAGCAGCAGCAGCGAATTCGAAGGAAAACCAGAGGAGGGGTTT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:4835805-4835824
TCCAGTTTCCGGGAGCGAGAGTAGAGCCCT4835805AACCTAGAAGCAGCAGCAGCGAATTCGAAGGAAAACCAGAGGAGGGGTTT
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:33488201-33488220
CTAGTTTCCGGGAGCCGAATGTAAAACCCT33488201AACCTAGAAGCAGCAGCAGCAGCGAATTCGACATCTAAATAATGAAAGAA
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:3014514-3014533
TCTAGTTTCCGGGAGCGACTGTAAAACCCT3014514AACCTAGAAGCAGCAGCAGCGAATTCGAAAGACAACCAAATGAGGGGTTT
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:26449306-26449325
CTAGTTTCCTGGAGCCAAATGTAAAACCCT26449306AACCTAGAAGCAGCAGCAGCAGCAGCGAATTCGACAGCTAAATAAAGAAA
3_Tms_b3v08.
OB792747.1:99745-99764
CATTACCGTCATCACTACCATAAACTACAA99745AACCTAGAAGCAGCAGCAGCAGTTAAAATAAACACAAAAACCGTGAGTAT
2_Tsi_b3v08.
OC002833.1:7732-7751
CACTACCAGCACAACTACATTAAACTCCAA7732AACCTAGAAGCAGCAGCAGCGCAAGTGAATACCAAAAGCGGGAGTATCTT
4_Tbi_b3v08.
OD564438.1:159386-159405
CATAACCGGCATCACTACCATAATCTACAA159386AACCTAGAAGCAGCAGCAGCAGTAAAAGTTAACACAAAAAGCGGGAGTAT
Alitta virens genome assembly, chromosome: 13.
OW028585.1:25846459-25846478
CAGCCTACAAAACCATGTTTTCACGAAAAT25846459AACCTAGAAGCAGCAGCAGCAGCAGCAGCTTGATGAACACACACATGAAG
Alitta virens genome assembly, chromosome: 13.
OW028585.1:25981449-25981468
CAGCCTACAAAACCATGTTTTCACAAAAAT25981449AACCTAGAAGCAGCAGCAGCAGCTTGATGAACACACACATGAAGAACTAT
Anopheles marshallii genome assembly, chromosome: 2.
OX030903.1:66501460-66501479
GGGGCAGCAGTAGCGGCAACATAGGACGAT66501460AACCTAGAAGCAGCAGCAGCAAGAACGAGTAACCAGAGCTGCAGCAGTGT
Tetheella fluctuosa genome assembly, chromosome: 21.
OX578235.1:8263899-8263918
ATGGTTTTGTGCTACGAGGACAGCAGCTTC8263899AACCTAGAAGCAGCAGCAGCATTGTATCGGGATAGGTTTGGTGTACGGCC
Stenodema calcarata genome assembly, chromosome: 6.
OY986053.1:15891870-15891889
GAACCTTGAAGGGTACCAGTGGTCCCTGGC15891870AACCTAGAAGCAGCAGCAGCTCTCACTGGCAGTTATATACCACGTGTATA
Cepaea hortensis genome assembly, chromosome: 1.
OY992876.1:154692070-154692089
ACTACTGAACTTAAAATTGCACAGTAAATA154692070AACCTAGAAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTGCTGCTGCTTCTAGGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGCTGCTGCTTCTAGGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.509 | 0.500 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGCTGCTGCTTCTAGGTT&k=0&no_gap=0&offset=0&limit=50
0.679 | 0.170 | search_minus_done; http://172.18.8.135:50400/match?q=AACCTAGAAGCAGCAGCAGC&k=0&no_gap=0&offset=0&limit=7
0.700 | 0.022 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).