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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:51:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rattus norvegicus DNA, BAC clone: RNB2-437G15, 5' end.
FT217894.1:68-87
TCATGGCCCAGGATTCACTATGTAGACCTA68GCTGGTGTAACTAGAGAGCAGCCGGCCATCTGTCTCTGAGGGATGGAAGT
Rattus norvegicus clone CH230-3J17, WORKING DRAFT SEQUENCE, 8 ordered pieces.
AC094341.7:114078-114097
TCATGGCCCAGGATTCACTATGTAGACCTA114078GCTGGTGTAACTAGAGAGCAGCCGGCCATCTGTCTCTGAGGGATGGAAGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB029G12, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC241006.1:65573-65592
ATAAGTCTAGAGAAATCAACTCTCTATATG65573GCTGGTGTAACTAGAGAGCAGGAAGCGGAAACTCTCTCGAGCTTCCCTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033I20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241012.1:105126-105145
ATAAGTCTAGAGAAATCAACTCTCTATATG105126GCTGGTGTAACTAGAGAGCAGGAAGCGGAAACTCTCTCGAGCTTCCCTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB035A14, complete sequence.
AC189315.2:1141-1160
ATAAGTCTAGAGAAATCAACTCTCTATATG1141GCTGGTGTAACTAGAGAGCAGGAAGCGGAAACTCTCTCGAGCTTCCCTTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:2249617-2249636
ATAAGTCTAGAGAAATCAACTCTCTATATG2249617GCTGGTGTAACTAGAGAGCAGGAAGCGGAAATTCTCTCGAGCTTCCTTTT
Rattus norvegicus clone CH230-98D22, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC111587.4:16200-16219
ACTTCCATCCCTCAGAGACAGATGGCCGGC16200TGCTCTCTAGTTACACCAGCTAGGTCTACATAGTGAATCCTGGGCCATGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037I10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241016.1:109642-109661
AAAGGGAAGCTCGAGAGAGTTTCCGCTTCC109642TGCTCTCTAGTTACACCAGCCATATAGAGAGTTGATTTCTCTAGACTTAT
Brassica rapa subsp. pekinensis clone KBrH088C05, complete sequence.
CU914556.1:16038-16057
AAAGGGAAGCTCGAGAGAGTTTCCGCTTCC16038TGCTCTCTAGTTACACCAGCCATATAGAGAGTTGATTTCTCTAGACTTAT
Ischnura elegans genome assembly, chromosome: 9.
OV121109.1:67862909-67862928
GTGCTGTTAACGAGTTGAAACAAAACTGCA67862909TGCTCTCTAGTTACACCAGCCGTGTATATAGCTGCGTCAAACTGGCCGCG
Megachile ligniseca genome assembly, chromosome: 10.
OX243786.1:10605593-10605612
TAACGAGGGCCAGCCTACATTTCAGGATGT10605593TGCTCTCTAGTTACACCAGCCAGTAATAAAGGTCGGCTTGCATTTTAGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTGGTGTAACTAGAGAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGGTGTAACTAGAGAGCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.141 | 0.133 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGGTGTAACTAGAGAGCA&k=0&no_gap=0&offset=0&limit=50
0.186 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTCTCTAGTTACACCAGC&k=0&no_gap=0&offset=0&limit=44
0.189 | 0.003 | cgi_end;

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