GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:43:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS24020B04 KS24 Capsicum annuum cDNA, mRNA sequence.
GD119725.1:225-244
TTGAATTGGAAGTGGAACTTACCTATGGGT225GCTGTAGTCTTCGGTTTGCCTGTATTTGATTTTTCTGTGATGGAGCTACG
KS24034D10 KS24 Capsicum annuum cDNA, mRNA sequence.
GD121044.1:225-244
TTGAATTGGAAGTGGAACTTACCTATGGGT225GCTGTAGTCTTCGGTTTGCCTGTATTTGATTTTTCTGTGATGGAGCTACG
TSA: Capsicum annuum CM_MegaContig_11084 mRNA sequence.
JW100644.1:367-386
TTGAATTGGAAGTGGAACTTACCTATGGGT367GCTGTAGTCTTCGGTTTGCCTGTATTTGATTTTTCTGTGATGGAGCTACG
TSA: Capsicum annuum EJ_MegaContig_1011, mRNA sequence.
JW128813.1:342-361
TTGAATTGGAAGTGGAACTTACCTATGGGT342GCTGTAGTCTTCGGTTTGCCTGTATTTGATTTTTCTGTGATGGAGCTACG
TSA: Capsicum annuum MA_MegaContig_621, mRNA sequence.
JW156096.1:330-349
TTGAATTGGAAGTGGAACTTACCTATGGGT330GCTGTAGTCTTCGGTTTGCCTGTATTTGATTTTTCTGTGATGGAGCTACG
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:259085912-259085931
TTGAATTGGAAGTGGAACTTACCTATGGGT259085912GCTGTAGTCTTCGGTTTGCCTGTATTTGATTTTTCTGTGATGGAGCTACG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:262751678-262751697
TTGAATTGGAAGTGGAACTTACCTATGGGT262751678GCTGTAGTCTTCGGTTTGCCTGTATTTGATTTTTCTGTGATGGAGCTACG
Alitta virens genome assembly, chromosome: 4.
OW028576.1:35692084-35692103
CACTTGTGGCCATGATGACCAGTGTCACTA35692084GGCAAACCGAAGACTACAGCTTCCTTGCAAACAAAATCAAGGAGAGTGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTGTAGTCTTCGGTTTGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGTAGTCTTCGGTTTGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.322 | 0.313 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGTAGTCTTCGGTTTGCC&k=0&no_gap=0&offset=0&limit=50
0.354 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GGCAAACCGAAGACTACAGC&k=0&no_gap=0&offset=0&limit=43
0.354 | 0.001 | cgi_end;

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