GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:47:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:18459490-18459509
GGCGCTGGCTTGCGACGTCGTTTGGGAGGT18459490GCTGTCACGTTGGGTGTATGGGAAAACGGTCGAGAAGGTGGCGCCGGTGT
Othius punctulatus genome assembly, chromosome: 2.
OX638139.1:12027975-12027994
CGAGTGTAGCCATTAAATGATTGGCAATTT12027975GCTGTCACGTTGGGTGTATGCAAATAATTTCCCTATAGTTTAGAACGGTT
UCRCS01_04cf06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cf06, mRNA sequence.
CB292527.1:43-62
ACACCGGCGCCACCTTCTCGACCGTTTTCC43CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
USDA-FP_10805 Rough Lemon seedling root Citrus jambhiri cDNA clone RLR05_H07 5', mRNA sequence.
CO912711.1:153-172
ACACCGGCGCCACCTTCTCGACCGTTTTCC153CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
UCRCS11_03H17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0003H17, mRNA sequence.
DN619107.1:441-460
ACACCGGCGCCACCTTCTCGACCGTTTTCC441CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
IC0AAA42BG06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276912.1:406-425
ACACCGGCGCCACCTTCTCGACCGTTTTCC406CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
CA26-C1-002-003-D09-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence.
EY842585.1:115-134
ACACCGGCGCCACCTTCTCGACCGTTTTCC115CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
IC0AAA42BG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42BG06, mRNA sequence.
FC912428.1:406-425
ACACCGGCGCCACCTTCTCGACCGTTTTCC406CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTGTCACGTTGGGTGTATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGTCACGTTGGGTGTATG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.170 | 0.162 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGTCACGTTGGGTGTATG&k=0&no_gap=0&offset=0&limit=50
0.548 | 0.378 | search_minus_done; http://172.18.8.135:50400/match?q=CATACACCCAACGTGACAGC&k=0&no_gap=0&offset=0&limit=48
0.552 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).