GGGenome | Results

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2025-04-06 06:31:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Homo sapiens chromosome 5 clone RP11-536I7, complete sequence.
AC093296.2:59859-59875

ACTCAAACACACAGCTTGCTTATTCACTCA59859GCTGTGCACTAGGTTTCAGGTTTGAGTTTTAGGGAAAACTGAAAATT

Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:162948007-162948023

CTATTTTCTTACTTTAAAACAGAATTTTTA162948007GCTGTGCACTAGGTTTCTCAACAAAAGGTTATTTATTACCTCTTTTG

Sciurus vulgaris genome assembly, chromosome: 3.
LR738613.1:32231045-32231061

CAGATCACTTGTATCAACTACAGTAGCCAT32231045GCTGTGCACTAGGTTTCCGTGACTTATTCATCTTATAACTGAGAGTG

Acomys kempi genome assembly, chromosome: 6.
OU015360.1:8146967-8146983

AGGTACATAAATAGGCACTTTTCAGAGTCT8146967GCTGTGCACTAGGTTTCTAGCCAAGCAGAAGCTGTGCTTCTGGTGCT

Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:142121592-142121608

TCTTCTCCCGAGGAGGCTCGCTTCCCGCAT142121592GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCTACAGG

Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:142130665-142130681

TCTTCTCCCGAGGAGGCTCGCTTCCCGCAT142130665GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCTACAGG

Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:142283481-142283497

TCTTCTCCCGAGGAGGCTCGCTTCCCGCAT142283481GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCTACAGG

Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:142300226-142300242

TCTTCTCCCGAGGAGGCTCGCTTCCCGCAT142300226GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCTACAGG

Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:142316971-142316987

TCTTCTCCCGAGGAGGCTCGCTTCCCGCAT142316971GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCTACAGG

Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:142331623-142331639

TCTTCTCCCGAGGAGGCTCGCTTCCCGCAT142331623GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCTACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45040299-45040315

TCTTCTCCCCAGGAGGCTCGCTTCCCCCAT45040299GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45043801-45043817

TCTTCTCCCCAGGAGGCTCGCTTCCCCCAT45043801GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45256800-45256816

TCTTCTCCCCAGGAGGCTCGCTTCCCGCCT45256800GCTGTGCACTAGGTTTCCAGGCGGAGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45378247-45378263

TCTTCTCCCCAGGAGGCTCGCTTCCCCCAT45378247GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45442727-45442743

TCTTCTCCCCAGGAGGCTCGCTTCCCGCAT45442727GCTGTGCACTAGGTTTCCAGGCGGAGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45454643-45454659

TCTTCTCCCCAGGAGGCTCGCTTCCCGCCT45454643GCTGTGCACTAGGTTTCCAGGCGGAGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45464455-45464471

TCTTCTCCCCAGGAGGCTCGCTTCCCGCCT45464455GCTGTGCACTAGGTTTCCAGGCGGAGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45466557-45466573

TCTTCTCCCCAGGAGGCTCGCTTCCCGCCT45466557GCTGTGCACTAGGTTTCCAGGCGGAGGCGCCCCGCGCCTCCAACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45607985-45608001

TCTTCTCCCGAGGAGGCTCGCTTCCCGCAT45607985GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCCACAGG

Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:45621297-45621313

TCTTCTCCCGAGGAGGTTCGCTTCCCACAT45621297GCTGTGCACTAGGTTTCCAGGCGGGGGCGCCCCGCGCCTCCAACAGG

Canis lupus genome assembly, chromosome: X.
HG994381.1:20803937-20803953

GATAGGCAAGAATAGAGAAGGATGGCATCA20803937GCTGTGCACTAGGTTTCTTGGCTTCTCTAAATGGGCATGTCAGGTGA

Plectropomus leopardus DNA, chromosome 17, nearly complete sequence.
AP022716.1:23463321-23463337

GCTGCATTTTCTTCATGAAAATGTAAGCAG23463321GCTGTGCACTAGGTTTCATCTTTGCACTAACTTTCCTTAAACTGATA

Furcifer pardalis isolate Fpa_1 chromosome 5.
CP126894.1:44584926-44584942

CCTTTTCAATATAGGTAGGTGGCTAGGAGT44584926GCTGTGCACTAGGTTTCATGGAGCAGAGACACTCAAAATTCCATAGA

Gouania willdenowi genome assembly, chromosome: 6.
LR132000.1:14081215-14081231

AAAATGTCCACTGGTTTCTACTAGTGCTTA14081215GCTGTGCACTAGGTTTCAAACCAACACATGGAGACCCCGGCCTGCTA

Microcaecilia unicolor genome assembly, chromosome: 1.
LR594632.1:583074742-583074758

ACCAGTTATGGTTTAGAACTGCAATGCAGT583074742GCTGTGCACTAGGTTTCTCTCAGGGGTTTCTCATTTTAGTGACTCAT

Microcaecilia unicolor genome assembly, chromosome: 1.
LR594632.1:598538278-598538294

CCTTTCTCATGGATGACTTCTCTAAGATGT598538278GCTGTGCACTAGGTTTCAGATTCTGATCTAGAGTCATTTGTTTAGGA

Scyliorhinus canicula genome assembly, chromosome: 6.
LR744035.1:120541903-120541919

GCCTGAGTGCTGAAGATGCTCATCTTGAAT120541903GCTGTGCACTAGGTTTCCTGTCATCAGATACATAATCCAGAAAATAA

Trachurus trachurus genome assembly, chromosome: 24.
LR991647.1:12374197-12374213

TCGAACCATCCCAGTGCTGCTGTTGCTGCT12374197GCTGTGCACTAGGTTTCATTATGTGTCACGCAGCGCAGCAGAAAACG

MAG: Porcine picobirnavirus isolate 15216_NODE_115_len_2473_cov_18.089744 hypothetical protein and capsid protein-like gene, partial sequence.
MW978472.1:454-470

ATGTTGCAAGTTCATTCTCCATGTCAGGAA454GCTGTGCACTAGGTTTCAGCATTGAAGTCAACCTGGTCAGTATCATT

ga19a07.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU020913 5', mRNA sequence.
AW126852.1:71-87

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG71GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

gb01e03.y1 Moss EST library PPN Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPN061505 5', mRNA sequence.
AW599050.1:82-98

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG82GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

gb16f12.y1 Moss EST library PPN Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPN101124 5', mRNA sequence.
AW738951.1:221-237

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG221GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

Physcomitrella patens cDNA clone:pphf11h06, 5' end.
BJ940612.1:602-618

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG602GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

CAYY10551.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens cDNA clone CAYY10551 5', mRNA sequence.
FC326783.1:376-392

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG376GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

CAYY27469.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens cDNA clone CAYY27469 5', mRNA sequence.
FC352131.1:262-278

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG262GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

CAYY3043.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens cDNA clone CAYY3043 5', mRNA sequence.
FC356943.1:408-424

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG408GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

CAYY8837.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens cDNA clone CAYY8837 5', mRNA sequence.
FC373706.1:686-702

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG686GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

CAYZ11318.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens cDNA clone CAYZ11318 5', mRNA sequence.
FC377699.1:677-693

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG677GCTGTGCACTAGGTTTC

CAYZ8901.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens cDNA clone CAYZ8901 5', mRNA sequence.
FC428557.1:270-286

AGTCTCTGGCTAAGCTCTCTGAATGAGCTG270GCTGTGCACTAGGTTTCGGAGATATTCGTTGTGTAGTTGCGAAGGTA

CBAX12051.fwd CBAX Physcomitrella patens subsp. patens Gransden - dessicated (L) Physcomitrella patens cDNA clone CBAX12051 5', mRNA sequence.
FC437843.1:762-778

AGTCTCTGGCTAAGCTCTCTGAATGAACTG762GCTGTGCACTAGGTTTCGGAGAT

TSA: Macaca mulatta Mamu_528781 mRNA sequence.
JU326771.1:4113-4129

TACCATCAGTTCTAGGGAGACCCACCTGCA4113GCTGTGCACTAGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGT

TSA: Macaca mulatta Mamu_105084 mRNA sequence.
JV471659.1:706-722

TACCATCAGTTCTAGGGAGACCCACCTGCA706GCTGTGCACTAGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGT

TSA: Macaca mulatta Mamu_12338 mRNA sequence.
JV510006.1:2300-2316

TACCATCAGTTCTAGGGAGACCCACCTGCA2300GCTGTGCACTAGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGT

TSA: Macaca mulatta Mamu_132834 mRNA sequence.
JV548064.1:409-425

TACCATCAGTTCTAGGGAGACCCACCTGCA409GCTGTGCACTAGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGT

TSA: Macaca mulatta Mamu_259032 mRNA sequence.
JV584630.1:2869-2885

TACCATCAGTTCTAGGGAGACCCACCTGCA2869GCTGTGCACTAGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGT

TSA: Macaca mulatta Mamu_309391 mRNA sequence.
JV687045.1:183-199

TACCATCAGTTCTAGGGAGACCCACCTGCA183GCTGTGCACTAGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGT

TSA: Macaca mulatta Mamu_567396 mRNA sequence.
JV716992.1:4309-4325

TACCATCAGTTCTAGGGAGACCCACCTGCA4309GCTGTGCACTAGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGT

Homo sapiens clone RP13-546C24, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC144533.2:41677-41693

CTATTTTCTTACTTTAAAACAGAATTTTTA41677GCTGTGCACTAGGTTTCTCAACAAAAGGTTATTTATTACCTCTTTTG

Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:345790412-345790428

AAGGTCTAAGGCTTACTCTACCTCGTGGAG345790412GCTGTGCACTAGGTTTCAGGTTCACCCATGGCTATAAACTACTTAAA

Fragum fragum genome assembly, chromosome: 3.
OX336367.1:73746814-73746830

AATACAAACAAACAATTACACCTGTATTTC73746814GCTGTGCACTAGGTTTCCGCTTAACCTTCCTTTATTTGCATATTGAT

Meconema thalassinum genome assembly, chromosome: 1_1.
OX336388.2:1377861002-1377861018

CTGCATGATACAGCGGTAACATTCTCGCCT1377861002GCTGTGCACTAGGTTTCTTGATCGAATCTTGGTTCAGTCAATTGGCA

Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:239647800-239647816

CTGCGCGGTGCAGAGGTGACGTTCTCGTCT239647800GCTGTGCACTAGGTTTCAGGATCAAATCCTGGCGCAGTCAATTGGCA

Ostrea edulis genome assembly, chromosome: 8.
OX387711.1:46063994-46064010

ATGTGCTGTTTACTATGTTTGATTATATGT46063994GCTGTGCACTAGGTTTCGTTTTCAATCATGTATATTTAGATTGATTT

Ostrea edulis genome assembly, chromosome: 8.
OX387711.1:46653302-46653318

ATGTGCTGTTTACTATGTTTGATTATATGT46653302GCTGTGCACTAGGTTTCGTTTTCAATCATGTATATTTAGATTGATTT

Lochmaea capreae genome assembly, chromosome: 10.
OX421404.1:30824669-30824685

GTCCCTCTTCTATCCAATAATCTCCTAGGT30824669GCTGTGCACTAGGTTTCTGAATTGCTGTACAATTCGCAAATATGTGG

Amaurobius ferox genome assembly, chromosome: 1.
OX578134.1:92410543-92410559

AATGTCACTGATGAAATACATCTTGAATAA92410543GCTGTGCACTAGGTTTCTGTGCATGTAAATGTTATTCTTTGCAATTT

Pseudoips prasinana genome assembly, chromosome: 2.
OX621236.1:9079746-9079762

TCTAGTACAAAAAGATTCTTAAAGTAATGT9079746GCTGTGCACTAGGTTTCATAAAATATTAACAAGTGGACCATGTATAT

Tetanocera ferruginea genome assembly, chromosome: 5.
OY282644.1:26783976-26783992

TGGGCTCCGCAATATTAAAACGTTTGCAAA26783976GCTGTGCACTAGGTTTCCAAGACATTGTTGTGCGTACAATAGTAACG

Helicoverpa armigera genome assembly, chromosome: 7.
OZ005773.1:11768236-11768252

CTCGTTGGCCTAGCTGTCCACAGCGCAGCT11768236GCTGTGCACTAGGTTTCGGGTTTGATTCTCGGGTCGGGCTGAAATCG

Schoenobius gigantella genome assembly, chromosome: 4.
OZ012544.1:2599428-2599444

TTTTGTACATAACCACTTTATAATTCACAA2599428GCTGTGCACTAGGTTTCTGTAGTTTCCTCACTTTTTGGATGGAAATT

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.786 | 0.777 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGTGCACTAGGTTTC&k=0&no_gap=0&offset=0&limit=50
0.853 | 0.066 | search_minus_done; http://172.18.8.135:50400/match?q=GAAACCTAGTGCACAGC&k=0&no_gap=0&offset=0&limit=0
0.853 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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