GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:13:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_6063 mRNA sequence.
JL887259.1:413-434
TGAGCAAAGATCTCTGGAACTGTGGATTTT413GCTGTTGAAGGAGAGAGTGTTGATTCTGTTGAAGCTGCTGTTGCTGCTGCTG
MBEFR45TF mth2 Medicago truncatula genomic clone 46G18, genomic survey sequence.
CG919575.1:384-405
TGAGCAAAGATCTCTGGAATTGTGGATTTT384GCTGTTGAAGGAGAGAGTGTTGATTCTGTTGAAGCTGCTGTTGCTGCTGCTG
mth2-166B16RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR492720.1:462-483
TGAGCAAAGATCTCTGGAATTGTGGATTTT462GCTGTTGAAGGAGAGAGTGTTGATTCTGTTGAAGCTGCTGTTGCTGCTGCTG
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:5971524-5971545
TGAGCAAAGATCTCTGGAGCTGTGGATTTT5971524GCTGTTGAAGGAGAGAGTGTTGATTTTGTTGAAGCTGCTGCTGTTGAACTGC
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:59905030-59905051
TGAGCAAAGTTCTCTGGAGCTGTGGATTTT59905030GCTGTTGAAGGAGAGAGTGTTGATTTTGTTGAAGCTGCTGCTGCTGAACTGC
Medicago lupulina genome assembly, chromosome: 5.
OY283143.1:60643756-60643777
TGAGCAAAGATCTCTGGAACTGTGGATTTT60643756GCTGTTGAAGGAGAGAGTGTTGATTCTGTTGAAGCTGCTGTTGCTGCTGCTG
M111086e DSIR Medicago truncatula cDNA clone IR168, mRNA sequence.
AW208053.2:107-128
CAGCAGCAGCAACAGCAGCTTCAACAGAAT107CAACACTCTCTCCTTCAACAGCAAAATCCACAATTCCAGAGATCTTTGCTCA
NF023G05PL1F1037 Phosphate starved leaf Medicago truncatula cDNA clone NF023G05PL 5', mRNA sequence.
BE324936.1:304-325
CAGCAGCAGCAACAGCAGCTTCAACAGAAT304CAACACTCTCTCCTTCAACAGCAAAATCCACAATTCCAGAGATCTTTGCTCA
EST647831 HOGA Medicago truncatula cDNA clone HOGA-33K14, mRNA sequence.
CB895039.1:534-555
CAGCAGCAGCAACAGCAGCTTCAACAGAAT534CAACACTCTCTCCTTCAACAGCAAAATCCACAATTCCAGAGATCTTTGCTCA
s13dNF69D11MJ090_272184 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX532952.1:336-357
CAGCAGCAGCAACAGCAGCTTCAACAGAAT336CAACACTCTCTCCTTCAACAGCAAAATCCACAATTCCAGAGATCTTTGCTCA
Medicago truncatula chromosome 8 clone mth2-80a22, WORKING DRAFT SEQUENCE, 6 unordered pieces.
AC146708.20:98947-98968
CAGCAGCAGCAACAGCAGCTTCAACAGAAT98947CAACACTCTCTCCTTCAACAGCAAAATCCACAATTCCAGAGATCTTTGCTCA
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:6140566-6140587
GCAGTTCAACAGCAGCAGCTTCAACAAAAT6140566CAACACTCTCTCCTTCAACAGCAAAATCCACAGCTCCAGAGATCTTTGCTCA
Medicago arabica genome assembly, chromosome: 5.
OX326968.1:7697872-7697893
CAGCAGCAGCAGCAGCAGCTTCAACAGAAT7697872CAACACTCTCTCCTTCAACAGCAAAATCCACAACAGTTCCAGAGATCTTTGC
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:4603089-4603110
GCAGTTCAGCAACAGCAGCTTCAACAAAAC4603089CAACACTCTCTCCTTCAACAGCAAAATCCACAGCTCCAGAGATCTTTGCTCA
Trifolium dubium genome assembly, chromosome: 12.
OX638073.1:3700675-3700696
GCAGTTCAGCAACAGCAGCTTCAACAAAAC3700675CAACACTCTCTCCTTCAACAGCAAAATCCACAGCTCCAGAGATCTTTGCTCA
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:7607611-7607632
CAGCAGCAGCAGCAGCAGCTTCAACAAAAT7607611CAACACTCTCTCCTTCAACAGCAAAATCCACAGCTCCAGAGATCTTTGCTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTGTTGAAGGAGAGAGTGTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGTTGAAGGAGAGAGTGTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.276 | 0.268 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGTTGAAGGAGAGAGTGTTG&k=0&no_gap=0&offset=0&limit=50
0.465 | 0.189 | search_minus_done; http://172.18.8.135:50400/match?q=CAACACTCTCTCCTTCAACAGC&k=0&no_gap=0&offset=0&limit=44
0.472 | 0.007 | cgi_end;

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