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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 16:16:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis clone KBrH106B05, complete sequence.
CU915253.1:50959-50978
CAAACTTGTCTGCTCAAGGTATGCAACTGC50959GCTGTTTGACCTGATATCCTTAAATTGAGAGTAGACATTTGATTTTTTTT
Brassica rapa subsp. pekinensis clone KBrH020I11, complete sequence.
CU984558.1:52315-52334
CAAACTTGTCTGCTCAAGGTATGCAACTGC52315GCTGTTTGACCTGATATCCTTAAATTGAGAGTAGACATTTGATTTTTTTT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:42428363-42428382
CAAACTTGTCTGCTCAAGGTATGCAACCGC42428363GCTGTTTGACCTGATATCCTTAAATTAAGAGTAGACATTTGAATTTTTTT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:45329419-45329438
CAAACTTGTCTGCTCAAGGTATGCAACCGC45329419GCTGTTTGACCTGATATCCTTAAATTAAGAGTAGACATTTGAATTTTTTT
Nasturtium officinale genome assembly, chromosome: 8.
OY978506.1:7124375-7124394
CAAACTTGTCTGCTCAAGGTATGCAACTGG7124375GCTGTTTGACCTGATATCCTTATATAATGATAGTAGACATTTGAAAAAAA
Cardamine chenopodiifolia genome assembly, chromosome: 6.
OZ000464.1:10068810-10068829
CAAACTTGTCTGCTCAAGGTATGCAACTCG10068810GCTGTTTGACCTGATATCCTTAAATAATGACTAGTAGACATTTGAAAAAA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:54043241-54043260
AAAAAAAATCAAATGTCTACTCTCAATTTA54043241AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:13389024-13389043
AAAAAAATTCAAATGTCTACTCTTAATTTA13389024AGGATATCAGGTCAAACAGCGCGGTTGCATACCTTGAGCAGACAAGTTTG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39089847-39089866
AAAAAAAATCAAATGTCTACTCTCAATTTA39089847AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG
Brassica rapa genome, scaffold: A06.
LR031569.1:49149199-49149218
AAAAAAAATCAAATGTCTACTCTCAATTTA49149199AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:52765599-52765618
AAAAAAAATCAAATGTCTACTCTCAATTTA52765599AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTGTTTGACCTGATATCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGTTTGACCTGATATCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.339 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGTTTGACCTGATATCCT&k=0&no_gap=0&offset=0&limit=50
0.455 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=AGGATATCAGGTCAAACAGC&k=0&no_gap=0&offset=0&limit=44
0.459 | 0.004 | cgi_end;

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